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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Part of pymzml test cases
"""
import sys
import os
import pymzml.regex_patterns as rp
import unittest
from collections import OrderedDict as odict
class RegexTest(unittest.TestCase):
def setUp(self):
spec_OBO_1_1_0 = (
b'<spectrum id="spectrum=1019" index="8" defaultArrayLength="431">'
)
spec_OBO_1_1_0 = b'<spectrum id="scan=3" index="0" sourceFileRef="SF1" defaultArrayLength="92">'
spec_OBO_1_0_0 = (
b'<spectrum index="317" id="S318" nativeID="318" defaultArrayLength="34">'
)
spec_OBO_0_99_1 = b'<spectrum id="S20" scanNumber="20" msLevel="2">'
chro_OBO_1_1_0 = ""
chro_OBO_1_1_0 = ""
chro_OBO_1_0_0 = ""
chro_OBO_0_99_1 = ""
self.spec_tags = odict(
[
("OBO_1_1_0", spec_OBO_1_1_0),
("OBO_1_1_0", spec_OBO_1_1_0),
("OBO_1_0_0", spec_OBO_1_0_0),
("OBO_0_99_1", spec_OBO_0_99_1),
]
)
self.chro_tags = odict(
[
("OBO_1_1_0", chro_OBO_1_1_0),
("OBO_1_1_0", chro_OBO_1_1_0),
("OBO_1_0_0", chro_OBO_1_0_0),
("OBO_0_99_1", chro_OBO_0_99_1),
]
)
def test_spectrum_id_patter(self):
for tag in self.spec_tags.values():
self.assertRegex(tag.decode("utf-8"), rp.SPECTRUM_ID_PATTERN)
# def test_spectrum_open_patter(self):
# for tag in self.spec_tags.values():
# print('tag', tag, rp.SPECTRUM_OPEN_PATTERN)
# self.assertRegex(
# tag,
# rp.SPECTRUM_OPEN_PATTERN
# )
def test_spectrum_tag_patter(self):
for tag in self.spec_tags.values():
self.assertRegex(tag.decode("utf-8"), rp.SPECTRUM_TAG_PATTERN)
if __name__ == "__main__":
unittest.main(verbosity=3)
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