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Description: Save GSGW test output file to example_data
Author: Manuel Kösters <test@example.com>
Origin: upstream, https://github.com/pymzml/pymzML/commit/428329dd10fac5ae5fd2e72ffa6c0153d6e39491
Bug-Debian: https://bugs.debian.org/1122312
- example data for GSGW is saved to example_data and clean up is attempted
--- a/tests/file_io_indexed_gzip_writer_test.py
+++ b/tests/file_io_indexed_gzip_writer_test.py
@@ -30,7 +30,14 @@
def tearDown(self):
""" """
self.Writer.close()
- os.remove(os.path.abspath(os.path.join(".", "tests", "data", "unittest.mzml")))
+ try:
+ os.remove(os.path.abspath(os.path.join(".", "tests", "data", "unittest.mzml")))
+ except FileNotFoundError:
+ pass
+ try:
+ os.remove(os.path.abspath(os.path.join(".", "tests", "data", "unittest2.mzml")))
+ except FileNotFoundError:
+ pass
def test_init(self):
self.assertEqual(self.Writer.crc32, 0)
@@ -128,7 +135,9 @@
"uncompressed",
"CF_07062012_pH8_2_3A.mzML",
)
- self.Writer = GSGW(test_file, max_idx=80, max_idx_len=8, max_offset_len=8)
+ self.Writer = GSGW(test_file, max_idx=80, max_idx_len=8, max_offset_len=8, output_path=os.path.abspath(
+ os.path.join(".", "tests", "data", "unittest2.mzml")
+ ))
self.Writer.add_data(test_string, "a")
self.Writer.close()
file = open(self.paths[0], "rb")
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