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[tox]
envlist = py37,py38,py39,coverage,example_scripts,docu
[testenv]
deps =
numpy
pytest
whitelist_externals = pytest
commands =
pip install -r {toxinidir}/requirements_dev.txt
pytest {posargs}
[testenv:docu]
whitelist_externals =
make
/bin/bash
/usr/bin/bash
deps =
-Ur{toxinidir}/docs/requirements.txt
changedir = {toxinidir}/docs
commands =
sphinx-build source build
sphinx-build -b latex source build
#[testenv:format]
#deps =
# black
#commands =
# #pycodestyle -qq --statistics --count --ignore=E221,E203,E402 --max-line-length=90 pymzml
# black --check pymzml
[testenv:coverage]
passenv =
CI TRAVIS TRAVIS_*
deps =
numpy
commands =
pip install -e .
pip install -q -r {toxinidir}/requirements_dev.txt
coverage erase
coverage run {envbindir}/pytest
coverage report --omit=".tox/*","tests/*"
codecov
[testenv:example_scripts]
deps =
numpy
commands =
pip install -Ur{toxinidir}/requirements.txt
python example_scripts/access_run_info.py
python example_scripts/compare_spectra.py
python example_scripts/extract_ion_chromatogram.py
python example_scripts/extreme_values.py
python example_scripts/get_precursors.py
python example_scripts/has_peak.py
python example_scripts/highest_peaks.py
|
