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import asyncio
import pytest
@staticmethod
def test_create_vector(pyomop_fixture, metadata_fixture, vector_fixture, capsys):
engine = pyomop_fixture.engine
# create tables
asyncio.run(pyomop_fixture.init_models(metadata_fixture))
asyncio.run(create_vector(pyomop_fixture, vector_fixture, engine))
async def create_vector(pyomop_fixture, vector_fixture, engine):
from pyomop import Cohort
import datetime
from sqlalchemy.future import select
# Add a cohort
async with pyomop_fixture.session() as session:
async with session.begin():
session.add(Cohort(cohort_definition_id=2, subject_id=100,
cohort_end_date=datetime.datetime.now(),
cohort_start_date=datetime.datetime.now()))
await session.commit()
# Query the cohort
stmt = select(Cohort).where(Cohort.subject_id == 100)
result = await session.execute(stmt)
vector_fixture.result = result.scalars()
print(vector_fixture.df.dtypes)
assert vector_fixture.df.empty is False
result2 = await vector_fixture.sql_df(pyomop_fixture, 'TEST')
for row in result2:
print(row)
assert row.subject_id == 100
await session.close()
await engine.dispose()
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