File: pysam_test_stdin.py

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python-pysam 0.10.0%2Bds-2
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# usage: cat pysam_ex1.bam | python pysam_test_stdin.pyx

import pysam

samfile = pysam.Samfile( "-", "rb" )

# set up the modifying iterators
l = list(samfile.fetch( until_eof = True ))
assert len(l) == 3270