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'''
compile_test.py - check pyximport
=================================
test script for checking if compilation against
pysam and tabix works.
'''
# clean up previous compilation
import os
try:
os.unlink('_compile_test.c')
os.unlink('_compile_test.pyxbldc')
except OSError:
pass
import pyximport
pyximport.install(build_in_temp=False)
import _compile_test
import unittest
import pysam
class BAMTest(unittest.TestCase):
input_filename = "pysam_data/ex1.bam"
def testCount(self):
nread = _compile_test.testCountBAM(
pysam.Samfile(self.input_filename))
self.assertEqual(nread, 3270)
class GTFTest(unittest.TestCase):
input_filename = "tabix_data/example.gtf.gz"
def testCount(self):
nread = _compile_test.testCountGTF(
pysam.Tabixfile(self.input_filename))
self.assertEqual(nread, 237)
if __name__ == "__main__":
unittest.main()
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