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# Makefile for Sphinx documentation
#
# You can set these variables from the command line.
SPHINXOPTS =
SPHINXBUILD = sphinx-build
PAPER =
# Internal variables.
PAPEROPT_a4 = -D latex_paper_size=a4
PAPEROPT_letter = -D latex_paper_size=letter
ALLSPHINXOPTS = -d _build/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
DIR_PUBLISH=/ifs/home/andreas/public_html/documentation/pysam
.PHONY: help clean html dirhtml pickle json htmlhelp qthelp latex changes linkcheck doctest
help:
@echo "Please use \`make <target>' where <target> is one of"
@echo " html to make standalone HTML files"
@echo " dirhtml to make HTML files named index.html in directories"
@echo " pickle to make pickle files"
@echo " json to make JSON files"
@echo " htmlhelp to make HTML files and a HTML help project"
@echo " qthelp to make HTML files and a qthelp project"
@echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
@echo " changes to make an overview of all changed/added/deprecated items"
@echo " linkcheck to check all external links for integrity"
@echo " doctest to run all doctests embedded in the documentation (if enabled)"
@echo " publish to copy the HTML documentation to the server."
clean:
-rm -rf _build/*
html:
$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) _build/html
@echo
@echo "Build finished. The HTML pages are in _build/html."
dirhtml:
$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) _build/dirhtml
@echo
@echo "Build finished. The HTML pages are in _build/dirhtml."
pickle:
$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) _build/pickle
@echo
@echo "Build finished; now you can process the pickle files."
json:
$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) _build/json
@echo
@echo "Build finished; now you can process the JSON files."
htmlhelp:
$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) _build/htmlhelp
@echo
@echo "Build finished; now you can run HTML Help Workshop with the" \
".hhp project file in _build/htmlhelp."
qthelp:
$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) _build/qthelp
@echo
@echo "Build finished; now you can run "qcollectiongenerator" with the" \
".qhcp project file in _build/qthelp, like this:"
@echo "# qcollectiongenerator _build/qthelp/samtools.qhcp"
@echo "To view the help file:"
@echo "# assistant -collectionFile _build/qthelp/samtools.qhc"
latex:
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) _build/latex
@echo
@echo "Build finished; the LaTeX files are in _build/latex."
@echo "Run \`make all-pdf' or \`make all-ps' in that directory to" \
"run these through (pdf)latex."
changes:
$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) _build/changes
@echo
@echo "The overview file is in _build/changes."
linkcheck:
$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) _build/linkcheck
@echo
@echo "Link check complete; look for any errors in the above output " \
"or in _build/linkcheck/output.txt."
doctest:
$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) _build/doctest
@echo "Testing of doctests in the sources finished, look at the " \
"results in _build/doctest/output.txt."
publish:
rm -rf $(DIR_PUBLISH)
mkdir -p $(DIR_PUBLISH)
cp -r _build/html/* $(DIR_PUBLISH)
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