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#ifndef bcftools_PYSAM_H
#define bcftools_PYSAM_H
#include <stdio.h>
extern FILE * bcftools_stderr;
extern FILE * bcftools_stdout;
extern const char * bcftools_stdout_fn;
/*! set pysam standard error to point to file descriptor
Setting the stderr will close the previous stderr.
*/
FILE * bcftools_set_stderr(int fd);
/*! set pysam standard output to point to file descriptor
Setting the stdout will close the previous stdout.
*/
FILE * bcftools_set_stdout(int fd);
/*! set pysam standard output to point to filename
*/
void bcftools_set_stdout_fn(const char * fn);
/*! close pysam standard error and set to NULL
*/
void bcftools_close_stderr(void);
/*! close pysam standard output and set to NULL
*/
void bcftools_close_stdout(void);
int bcftools_puts(const char *s);
int bcftools_dispatch(int argc, char *argv[]);
void bcftools_set_optind(int);
extern int bcftools_main(int argc, char *argv[]);
#endif
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