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#include <ctype.h>
#include <assert.h>
#include <unistd.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "@pysam@.pysam.h"
FILE * @pysam@_stderr = NULL;
FILE * @pysam@_stdout = NULL;
const char * @pysam@_stdout_fn = NULL;
FILE * @pysam@_set_stderr(int fd)
{
if (@pysam@_stderr != NULL)
fclose(@pysam@_stderr);
@pysam@_stderr = fdopen(fd, "w");
return @pysam@_stderr;
}
void @pysam@_close_stderr(void)
{
fclose(@pysam@_stderr);
@pysam@_stderr = NULL;
}
FILE * @pysam@_set_stdout(int fd)
{
if (@pysam@_stdout != NULL)
fclose(@pysam@_stdout);
@pysam@_stdout = fdopen(fd, "w");
if (@pysam@_stdout == NULL)
{
fprintf(@pysam@_stderr, "could not set stdout to fd %i", fd);
}
return @pysam@_stdout;
}
void @pysam@_set_stdout_fn(const char *fn)
{
@pysam@_stdout_fn = fn;
}
void @pysam@_close_stdout(void)
{
fclose(@pysam@_stdout);
@pysam@_stdout = NULL;
}
int @pysam@_puts(const char *s)
{
if (fputs(s, @pysam@_stdout) == EOF) return EOF;
return putc('\n', @pysam@_stdout);
}
void @pysam@_set_optind(int val)
{
// setting this in cython via
// "from posix.unistd cimport optind"
// did not work.
//
// setting to 0 forces a complete re-initialization
optind = val;
}
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