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import glob
import sys
import os
from setuptools import setup, find_packages, Extension
from cy_build import CyExtension as Extension, cy_build_ext as build_ext
import pysam
test_module_suffix = os.path.dirname(os.path.abspath(__file__)).split(os.sep)[-1]
test_module_name = "PysamTestModule_{}".format(test_module_suffix)
TestModule = Extension(
"{}.BuildRead".format(test_module_name),
["{}/BuildRead.pyx".format(test_module_name)],
include_dirs=pysam.get_include(),
extra_link_args=pysam.get_libraries(),
define_macros=pysam.get_defines(),
)
setup(
name=test_module_name,
version='0.1',
packages=find_packages(),
package_dir={test_module_name: test_module_name},
ext_modules=[TestModule],
cmdclass={'build_ext': build_ext},
)
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