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from array import array
from typing import Iterable, Optional, Tuple, Union
def get_encoding_error_handler() -> str: ...
def set_encoding_error_handler(name: str) -> str: ...
def _pysam_dispatch(
collection: str,
method: str,
args: Optional[Iterable[str]],
catch_stdout: bool = ...,
is_usage: bool = ...,
save_stdout: Optional[str] = ...,
) -> Tuple[int, Union[bytes, str], Union[bytes, str]]: ...
def parse_region(
contig: Optional[str] = ...,
start: Optional[int] = ...,
stop: Optional[int] = ...,
region: Optional[str] = ...,
reference: Optional[str] = ...,
end: Optional[int] = ...,
) -> Tuple[str, int, int]: ...
def qualitystring_to_array(
input_str: Optional[str], offset: int = ...
) -> Optional[array]: ...
def array_to_qualitystring(qualities: array, offset: int = ...) -> Optional[str]: ...
def qualities_to_qualitystring(
qualities: Union[array, Iterable[str]], offset: int = ...
) -> Optional[str]: ...
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