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|
##fileformat=VCFv4.1
##INFO=<ID=PacBio,Number=1,Type=String,Description="Status of PacBio for this site">
##INFO=<ID=Sqnm,Number=1,Type=String,Description="Status of Sequenom for this site">
##INFO=<ID=Sanger,Number=1,Type=String,Description="Status of Sanger Sequencing for this site">
##INFO=<ID=NotCalledInValidationSamples,Number=.,Type=Flag,Description="Was not called polymorphic in sequencing for any of the passing validation samples; could still be polymorphic">
##reference=file:///humgen/1kg/reference/human_g1k_v37.fasta
#CHROM POS ID REF ALT QUAL FILTER INFO
20 207414 . G A . . PacBio=NoCall;Sqnm=NoCall
20 792106 . C G . . PacBio=Poly;Sqnm=NoCall
20 894031 . G A . . PacBio=Poly;Sqnm=Poly
20 1508892 . A G . . PacBio=Poly;Sqnm=Poly
20 1686745 . G A . . PacBio=Poly;Sqnm=NoCall
20 1818886 . C T . . PacBio=Poly;Sqnm=Poly
20 2062981 . A G . . PacBio=Poly;Sqnm=Poly
20 2773229 . A G . . PacBio=Poly;Sqnm=Poly
20 2817761 . T C . . PacBio=Poly;Sqnm=Poly
20 2994966 . G T . . PacBio=Poly;Sqnm=Poly
20 3126723 . C T . . PacBio=Poly;Sqnm=Poly
20 3523369 . G A . . PacBio=Poly;Sqnm=Poly
20 3635082 . A G . . PacBio=Poly;Sqnm=Poly
20 3714080 . C G . . PacBio=Poly;Sqnm=Poly
20 3905791 . G A . . PacBio=Poly;Sqnm=NoCall
20 3907250 . A G . . PacBio=Poly;Sqnm=Poly
20 4171994 . C T . . PacBio=Poly;Sqnm=Poly
20 4246375 . T C . . PacBio=Poly;Sqnm=NoCall
20 4375206 . C T . . PacBio=Poly;Sqnm=Poly
20 4434727 . A T . . PacBio=NoCall;Sqnm=Mono;Sanger=Mono
20 4495199 . G C . . PacBio=Poly;Sqnm=Poly
20 4835415 . C T . . PacBio=Poly;Sqnm=Poly
20 4915769 . T C . . PacBio=Poly;Sqnm=NoCall
20 4983198 . T C . . PacBio=Poly;Sqnm=Poly
20 5441171 . C T . . PacBio=Poly;Sqnm=NoCall
20 5978029 . T C . . PacBio=Poly;Sqnm=Poly
20 6061317 . C A . . PacBio=Poly;Sqnm=Poly
20 6328925 . C A . . PacBio=Poly;Sqnm=Poly
20 6675461 . C T . . PacBio=Poly;Sqnm=NoCall
20 6976115 . C T . . PacBio=Poly;Sqnm=Poly
20 7013349 . G A . . PacBio=NoCall;Sqnm=NoCall
20 7039302 . C T . . PacBio=Poly;Sqnm=Poly
20 7638704 . C A . . PacBio=Poly;Sqnm=Poly
20 7688381 . G A . . PacBio=Poly;Sqnm=Poly
20 7726350 . G T . . PacBio=Poly;Sqnm=Poly
20 7733957 . C T . . PacBio=Poly;Sqnm=Poly
20 7850516 . T C . . PacBio=Poly;Sqnm=Poly
20 8095059 . G A . . PacBio=NoCall;Sqnm=NoCall
20 8232012 . T A . . PacBio=Poly;Sqnm=Poly
20 8415290 . A C . . PacBio=Poly;Sqnm=Poly
20 8438535 . T C . . PacBio=Poly;Sqnm=NoCall
20 8815233 . G A . . PacBio=Mono;Sqnm=NoCall
20 8953629 . C G . . PacBio=Poly;Sqnm=Poly
20 9237267 . T A . . PacBio=Poly;Sqnm=Poly
20 9744549 . T C . . PacBio=Poly;Sqnm=Poly
20 9780416 . C A . . PacBio=Poly;Sqnm=Poly
20 10252552 . T C . . PacBio=Poly;Sqnm=Poly
20 10314038 . C G . . PacBio=Poly;Sqnm=Poly
20 10757416 . T C . . PacBio=Poly;Sqnm=Poly
20 11087688 . A G . . PacBio=Poly;Sqnm=Poly
20 11094107 . G A . . PacBio=NoCall;Sqnm=NoCall
20 11098680 . G A . . PacBio=Poly;Sqnm=Poly
20 11353163 . G C . . PacBio=Poly;Sqnm=Poly
20 11510559 . A G . . PacBio=Poly;Sqnm=Poly
20 11787224 . C T . . PacBio=Poly;Sqnm=Poly
20 11821024 . T C . . PacBio=Poly;Sqnm=Poly
20 11932295 . A G . . PacBio=Poly;Sqnm=Poly
20 11965311 . G T . . PacBio=Poly;Sqnm=Poly
20 12023599 . C T . . PacBio=Poly;Sqnm=Poly
20 12505523 . G T . . PacBio=Poly;Sqnm=Poly
20 12570054 . A C . . PacBio=NoCall;Sqnm=Poly
20 12667452 . A G . . PacBio=Poly;Sqnm=Poly
20 12678271 . G A . . PacBio=Poly;Sqnm=Mono
20 12704885 . T C . . PacBio=Poly;Sqnm=Poly
20 12733996 . C T . . PacBio=Poly;Sqnm=NoCall
20 12737269 . C T . . PacBio=NoCall;Sqnm=NoCall
20 12788981 . G A . . PacBio=Poly;Sqnm=Poly
20 12828594 . T C . . PacBio=Poly;Sqnm=Poly
20 12999157 . T C . . PacBio=Poly;Sqnm=Poly
20 13083804 . C G . . PacBio=Poly;Sqnm=Poly
20 13197077 . G T . . PacBio=Poly;Sqnm=NoCall
20 13217896 . A G . . PacBio=NoCall;Sqnm=Poly
20 13276778 . G A . . PacBio=Poly;Sqnm=Poly
20 13375116 . G A . . PacBio=Mono;Sqnm=NoCall;NotCalledInValidationSamples
20 13648056 . T C . . PacBio=Poly;Sqnm=Poly
20 13672895 . C T . . PacBio=Poly;Sqnm=Poly
20 14160159 . C G . . PacBio=Poly;Sqnm=Poly
20 14266815 . T A . . PacBio=Poly;Sqnm=Poly
20 14865143 . C T . . PacBio=Poly;Sqnm=Poly
20 14882868 . T G . . PacBio=Poly;Sqnm=Poly
20 15244725 . C A . . PacBio=Poly;Sqnm=Poly
20 15277072 . G A . . PacBio=Poly;Sqnm=Poly
20 15390867 . C T . . PacBio=Poly;Sqnm=Poly
20 15785205 . T C . . PacBio=Poly;Sqnm=Poly
20 15833020 . A G . . PacBio=Poly;Sqnm=Poly
20 15847620 . C T . . PacBio=Poly;Sqnm=Poly
20 15953253 . G A . . PacBio=Poly;Sqnm=NoCall
20 15964434 . G C . . PacBio=NoCall;Sqnm=NoCall
20 16183922 . G A . . PacBio=Poly;Sqnm=Poly
20 16190824 . A G . . PacBio=Poly;Sqnm=Poly
20 16557779 . A G . . PacBio=Poly;Sqnm=Poly
20 16730061 . C T . . PacBio=Poly;Sqnm=Poly
20 16794015 . T C . . PacBio=Poly;Sqnm=Poly
20 17048741 . G A . . PacBio=Poly;Sqnm=Poly
20 17299827 . G A . . PacBio=Poly;Sqnm=Poly
20 17299845 . C T . . PacBio=Poly;Sqnm=Poly
20 17390323 . G A . . PacBio=Poly;Sqnm=Poly
20 17624973 . C G . . PacBio=Poly;Sqnm=Poly
20 17666040 . G A . . PacBio=Poly;Sqnm=Poly
20 17735813 . T C . . PacBio=Poly;Sqnm=Poly
20 17794990 . A G . . PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples
20 17809418 . G A . . PacBio=Poly;Sqnm=Poly
20 17860794 . C T . . PacBio=Mono;Sqnm=NoCall
20 17881936 . A G . . PacBio=Poly;Sqnm=Poly
20 17893097 . C G . . PacBio=NoCall;Sqnm=NoCall
20 18188883 . A G . . PacBio=Poly;Sqnm=Poly
20 18199319 . G A . . PacBio=Poly;Sqnm=Poly
20 18233699 . C T . . PacBio=Poly;Sqnm=Poly
20 18536869 . G A . . PacBio=Poly;Sqnm=Poly
20 18637785 . T C . . PacBio=NoCall;Sqnm=Mono;Sanger=Mono;NotCalledInValidationSamples
20 18763166 . G A . . PacBio=Poly;Sqnm=Poly
20 19102715 . A G . . PacBio=NoCall;Sqnm=NoCall
20 19244609 . C T . . PacBio=Poly;Sqnm=Poly
20 19573719 . C T . . PacBio=Poly;Sqnm=Poly
20 19815613 . A G . . PacBio=NoCall;Sqnm=Poly
20 20511479 . C T . . PacBio=Poly;Sqnm=Poly;Sanger=Poly
20 20639358 . T C . . PacBio=Poly;Sqnm=Poly
20 21278490 . T C . . PacBio=Poly;Sqnm=Poly
20 21297718 . C G . . PacBio=Poly;Sqnm=Poly
20 21418269 . A T . . PacBio=Poly;Sqnm=Poly
20 21560553 . A T . . PacBio=Poly;Sqnm=Poly
20 21618451 . G A . . PacBio=NoCall;Sqnm=NoCall
20 21705723 . C A . . PacBio=Poly;Sqnm=Poly
20 22076189 . A G . . PacBio=Poly;Sqnm=Poly
20 22118677 . T A . . PacBio=Poly;Sqnm=Poly
20 22320721 . C T . . PacBio=Poly;Sqnm=Poly
20 22368918 . C A . . PacBio=Poly;Sqnm=Poly
20 23020003 . A G . . PacBio=Poly;Sqnm=Poly
20 23214163 . G A . . PacBio=Poly;Sqnm=Poly
20 23273877 . T C . . PacBio=Poly;Sqnm=Poly
20 23335790 . C T . . PacBio=Poly;Sqnm=NoCall
20 23790659 . C T . . PacBio=Poly;Sqnm=Poly
20 23830388 . T C . . PacBio=Poly;Sqnm=NoCall
20 23837678 . C G . . PacBio=Poly;Sqnm=Poly
20 23901081 . A C . . PacBio=Poly;Sqnm=Poly
20 23946361 . C T . . PacBio=Poly;Sqnm=Poly
20 23949242 . A G . . PacBio=Poly;Sqnm=Poly
20 24539119 . A G . . PacBio=Poly;Sqnm=Poly
20 24986457 . C T . . PacBio=Poly;Sqnm=Poly
20 25183729 . G A . . PacBio=NoCall;Sqnm=NoCall
20 25277133 . C T . . PacBio=Poly;Sqnm=Poly
20 25292464 . C T . . PacBio=Poly;Sqnm=NoCall
20 25528915 . G C . . PacBio=Poly;Sqnm=Poly
20 25851836 . A G . . PacBio=NoCall;Sqnm=NoCall
20 25970163 . C T . . PacBio=Poly;Sqnm=Poly
20 29920798 . C T . . PacBio=NoCall;Sqnm=NoCall
20 30007713 . T C . . PacBio=Poly;Sqnm=Poly
20 30051768 . T C . . PacBio=Poly;Sqnm=Poly
20 30183598 . T C . . PacBio=Poly;Sqnm=Poly
20 30604408 . G A . . PacBio=NoCall;Sqnm=NoCall
20 30759940 . G T . . PacBio=Poly;Sqnm=Poly
20 30881454 . G T . . PacBio=Poly;Sqnm=Poly
20 31356560 . C T . . PacBio=Poly;Sqnm=Poly
20 31450036 . A G . . PacBio=NoCall;Sqnm=Mono
20 31589920 . A T . . PacBio=Poly;Sqnm=Poly
20 31922121 . C T . . PacBio=NoCall;Sqnm=NoCall
20 32801430 . G C . . PacBio=Poly;Sqnm=Poly
20 32943975 . G T . . PacBio=Mono;Sqnm=Mono
20 33155812 . C A . . PacBio=Poly;Sqnm=Poly
20 34090682 . C T . . PacBio=Poly;Sqnm=Poly
20 34254080 . C T . . PacBio=Mono;Sqnm=NoCall;NotCalledInValidationSamples
20 34312126 . C T . . PacBio=Poly;Sqnm=NoCall
20 34481504 . G A . . PacBio=Poly;Sqnm=Poly
20 34694577 . G A . . PacBio=Poly;Sqnm=Poly
20 35026572 . T C . . PacBio=Poly;Sqnm=Poly
20 35472344 . T G . . PacBio=Poly;Sqnm=Poly
20 35882698 . G A . . PacBio=Poly;Sqnm=NoCall
20 36044719 . G A . . PacBio=Poly;Sqnm=NoCall
20 36047623 . C A . . PacBio=NoCall;Sqnm=NoCall
20 36204890 . C T . . PacBio=Poly;Sqnm=NoCall
20 36469514 . G C . . PacBio=NoCall;Sqnm=Poly
20 36840217 . T C . . PacBio=Poly;Sqnm=Poly
20 37460945 . C T . . PacBio=Mono;Sqnm=Poly
20 37665246 . G A . . PacBio=Poly;Sqnm=NoCall
20 37732397 . A G . . PacBio=Poly;Sqnm=Poly
20 37874645 . G T . . PacBio=Poly;Sqnm=Poly
20 37958191 . T C . . PacBio=Poly;Sqnm=Poly
20 37996273 . C T . . PacBio=Mono;Sqnm=NoCall;NotCalledInValidationSamples
20 38016547 . C T . . PacBio=Poly;Sqnm=Poly
20 38435682 . A G . . PacBio=Poly;Sqnm=Poly
20 38505534 . A T . . PacBio=Poly;Sqnm=Poly
20 38803278 . A G . . PacBio=Poly;Sqnm=Poly
20 38963803 . G C . . PacBio=Poly;Sqnm=Poly
20 38971986 . A G . . PacBio=Poly;Sqnm=Poly
20 39269586 . G A . . PacBio=Poly;Sqnm=Poly
20 39289390 . C A . . PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples
20 39318956 . T A . . PacBio=Poly;Sqnm=Poly
20 39736197 . A G . . PacBio=Poly;Sqnm=Poly
20 40241339 . T C . . PacBio=Poly;Sqnm=Poly
20 41473555 . G A . . PacBio=Poly;Sqnm=Poly
20 41878576 . T G . . PacBio=Poly;Sqnm=Poly
20 42022716 . A G . . PacBio=Poly;Sqnm=Poly
20 42033671 . A C . . PacBio=NoCall;Sqnm=NoCall
20 42270334 . C T . . PacBio=NoCall;Sqnm=NoCall
20 42449590 . C T . . PacBio=Poly;Sqnm=NoCall
20 42521157 . T G . . PacBio=Poly;Sqnm=Poly
20 42624300 . C A . . PacBio=Poly;Sqnm=Poly
20 42984548 . G A . . PacBio=Poly;Sqnm=Poly
20 43200148 . G C . . PacBio=Poly;Sqnm=Poly
20 43425384 . T G . . PacBio=Poly;Sqnm=Poly
20 43521990 . C G . . PacBio=Poly;Sqnm=Poly
20 43565804 . G A . . PacBio=Poly;Sqnm=Poly
20 43591237 . T C . . PacBio=Poly;Sqnm=Poly
20 43805929 . C T . . PacBio=Poly;Sqnm=Poly
20 43866692 . A G . . PacBio=Poly;Sqnm=Poly
20 43902088 . C T . . PacBio=Poly;Sqnm=Poly
20 44478507 . C A . . PacBio=Poly;Sqnm=Poly
20 44768810 . C T . . PacBio=Poly;Sqnm=Poly
20 45151582 . G A . . PacBio=Poly;Sqnm=Poly
20 45414003 . G A . . PacBio=Poly;Sqnm=Poly
20 45776825 . G C . . PacBio=Poly;Sqnm=Poly
20 46454905 . G A . . PacBio=Poly;Sqnm=NoCall
20 46823642 . C T . . PacBio=Poly;Sqnm=Poly
20 47001376 . C T . . PacBio=Poly;Sqnm=Poly
20 47079360 . G C . . PacBio=Poly;Sqnm=NoCall
20 47248953 . G A . . PacBio=Poly;Sqnm=Poly
20 47480655 . C T . . PacBio=Poly;Sqnm=Poly
20 47529099 . T C . . PacBio=Poly;Sqnm=Poly
20 47703355 . A C . . PacBio=Poly;Sqnm=Poly
20 47919541 . A G . . PacBio=Poly;Sqnm=Poly
20 48126120 . A C . . PacBio=Poly;Sqnm=Poly
20 48157380 . G A . . PacBio=Poly;Sqnm=Poly
20 48233077 . C T . . PacBio=Poly;Sqnm=Poly
20 48488571 . G A . . PacBio=Poly;Sqnm=Poly
20 48534468 . G A . . PacBio=Poly;Sqnm=NoCall
20 48631385 . G C . . PacBio=Poly;Sqnm=Poly
20 48654970 . G A . . PacBio=Poly;Sqnm=NoCall
20 48708007 . C T . . PacBio=Poly;Sqnm=Poly
20 48979827 . C A . . PacBio=Poly;Sqnm=Poly
20 49100106 . G A . . PacBio=Poly;Sqnm=Poly
20 49509102 . G A . . PacBio=Poly;Sqnm=Poly
20 49631170 . G A . . PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples
20 50210361 . C T . . PacBio=Poly;Sqnm=Poly
20 50309600 . C A . . PacBio=Poly;Sqnm=Poly
20 50681296 . T C . . PacBio=Poly;Sqnm=Poly
20 50750138 . A G . . PacBio=Poly;Sqnm=Poly
20 51639257 . G A . . PacBio=Mono;Sqnm=Poly
20 51814664 . T C . . PacBio=Poly;Sqnm=Poly
20 51891088 . C T . . PacBio=Poly;Sqnm=Poly
20 52299250 . A G . . PacBio=Poly;Sqnm=Poly
20 52363435 . G A . . PacBio=Poly;Sqnm=NoCall
20 52583941 . C T . . PacBio=Poly;Sqnm=Poly
20 52787584 . C T . . PacBio=Poly;Sqnm=Poly
20 53256945 . G A . . PacBio=Poly;Sqnm=Poly
20 54155398 . A G . . PacBio=Poly;Sqnm=Poly
20 54172374 . G T . . PacBio=Poly;Sqnm=Poly
20 54209446 . A G . . PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples;Sanger=Poly
20 54317862 . C T . . PacBio=Poly;Sqnm=Poly
20 54852735 . C T . . PacBio=Poly;Sqnm=NoCall
20 54889864 . G A . . PacBio=Poly;Sqnm=Poly
20 55208711 . G A . . PacBio=Poly;Sqnm=Poly
20 55220477 . G T . . PacBio=Poly;Sqnm=Poly
20 55224856 . G T . . PacBio=NoCall;Sqnm=NoCall
20 55441530 . C T . . PacBio=Poly;Sqnm=NoCall
20 55585710 . C T . . PacBio=Poly;Sqnm=Poly
20 55630163 . C T . . PacBio=Poly;Sqnm=Poly
20 56031994 . A G . . PacBio=Poly;Sqnm=Poly
20 56316071 . T G . . PacBio=Poly;Sqnm=Poly
20 56366198 . C T . . PacBio=Poly;Sqnm=Poly
20 56703987 . G A . . PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples;Sanger=Poly
20 56794829 . G C . . PacBio=Poly;Sqnm=Poly
20 56797026 . G A . . PacBio=Poly;Sqnm=Poly
20 56922427 . A G . . PacBio=Poly;Sqnm=Poly
20 57025102 . A T . . PacBio=Poly;Sqnm=Poly
20 57104529 . G A . . PacBio=Poly;Sqnm=Poly
20 57360225 . C T . . PacBio=Poly;Sqnm=Poly
20 57630386 . T A . . PacBio=NoCall;Sqnm=NoCall
20 57754033 . G A . . PacBio=Poly;Sqnm=Poly
20 57956631 . C T . . PacBio=Poly;Sqnm=Poly
20 57997801 . C T . . PacBio=Poly;Sqnm=NoCall
20 58046279 . C G . . PacBio=NoCall;Sqnm=NoCall
20 58186723 . A G . . PacBio=Poly;Sqnm=Poly
20 58214460 . C T . . PacBio=Poly;Sqnm=Poly
20 58317759 . A G . . PacBio=Poly;Sqnm=Poly
20 58491642 . A C . . PacBio=Poly;Sqnm=Poly
20 58560045 . C T . . PacBio=Poly;Sqnm=Poly
20 58629232 . C T . . PacBio=Poly;Sqnm=Poly
20 58805192 . G T . . PacBio=Poly;Sqnm=Poly
20 58869523 . A G . . PacBio=Poly;Sqnm=Poly
20 59337535 . T C . . PacBio=Poly;Sqnm=Poly
20 59441596 . G A . . PacBio=Poly;Sqnm=Poly
20 59445223 . G A . . PacBio=NoCall;Sqnm=NoCall
20 59605846 . C T . . PacBio=Poly;Sqnm=Poly
20 59864395 . G C . . PacBio=Poly;Sqnm=Poly
20 60099821 . G T . . PacBio=Poly;Sqnm=Poly
20 60290551 . A G . . PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples;Sanger=Poly
20 60362527 . G C . . PacBio=Poly;Sqnm=Poly
20 60516358 . C T . . PacBio=Poly;Sqnm=Poly
20 60559594 . C T . . PacBio=NoCall;Sqnm=Poly
20 60745115 . G A . . PacBio=Poly;Sqnm=Poly
20 60831300 . G A . . PacBio=Poly;Sqnm=Poly
20 60907675 . G A . . PacBio=Poly;Sqnm=Poly
20 61458191 . G A . . PacBio=Poly;Sqnm=Poly
20 61717607 . C T . . PacBio=Mono;Sqnm=Poly
20 61771154 . G A . . PacBio=Poly;Sqnm=Poly
20 61950497 . G A . . PacBio=Poly;Sqnm=Poly
20 62000091 . C T . . PacBio=Poly;Sqnm=Poly
20 62550780 . C T . . PacBio=NoCall;Sqnm=NoCall
20 62558259 . T C . . PacBio=Poly;Sqnm=Poly
20 62727205 . C T . . PacBio=Poly;Sqnm=Poly
|
