File: run-unit-test

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python-pyvcf 0.6.8%2Bgit20170215.476169c-9
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#!/bin/bash
set -e

pkg=python3-vcf

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

set -x
mkdir "${AUTOPKGTEST_TMP}"/vcf
cp -a /usr/share/doc/${pkg}/test "${AUTOPKGTEST_TMP}"/vcf

cd "${AUTOPKGTEST_TMP}"

# Do not unzip originally gzipped files
# It turned out that re-gzipping after unzipping will break the test!
NO_UNZIP_DIR=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
for gz in 1kg.vcf.gz issue-201.vcf.gz tb.vcf.gz ; do
    mv vcf/test/${gz} ${NO_UNZIP_DIR}
done
gunzip -r *
mv ${NO_UNZIP_DIR}/* vcf/test
rmdir ${NO_UNZIP_DIR}

pytest-3