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from __future__ import annotations
from types import GeneratorType
import numpy as np
import pytest
import vtk
from vtk.util.numpy_support import vtk_to_numpy
import pyvista as pv
from pyvista import Cell
from pyvista import CellType
from pyvista.core.utilities.cells import numpy_to_idarr
from pyvista.examples import cells as example_cells
from pyvista.examples import load_airplane
from pyvista.examples import load_explicit_structured
from pyvista.examples import load_hexbeam
from pyvista.examples import load_rectilinear
from pyvista.examples import load_structured
from pyvista.examples import load_tetbeam
from pyvista.examples import load_uniform
grids = [
load_hexbeam(),
load_airplane(),
load_rectilinear(),
load_structured(),
load_tetbeam(),
load_uniform(),
load_explicit_structured(),
]
ids = [str(type(grid)) for grid in grids]
cells = [
# 0D cells
example_cells.Vertex().get_cell(0),
example_cells.PolyVertex().get_cell(0),
# 1D cells
example_cells.Line().get_cell(0),
example_cells.PolyLine().get_cell(0),
# 2D cells
example_cells.Triangle().get_cell(0),
example_cells.Quadrilateral().get_cell(0),
example_cells.Polygon().get_cell(0),
example_cells.TriangleStrip().get_cell(0),
# 3D cells
example_cells.Hexahedron().get_cell(0),
example_cells.Voxel().get_cell(0),
example_cells.Tetrahedron().get_cell(0),
example_cells.Polyhedron().get_cell(0),
]
types = [
# 0D cells
CellType.VERTEX,
CellType.POLY_VERTEX,
# 1D cells
CellType.LINE,
CellType.POLY_LINE,
# 2D cells
CellType.TRIANGLE,
CellType.QUAD,
CellType.POLYGON,
CellType.TRIANGLE_STRIP,
# 3D cells
CellType.HEXAHEDRON,
CellType.VOXEL,
CellType.TETRA,
CellType.POLYHEDRON,
]
dims = [
# 0D cells
0,
0,
# 1D cells
1,
1,
# 2D cells
2,
2,
2,
2,
# 3D cells
3,
3,
3,
3,
]
npoints = [
# 0D cells
1,
6,
# 1D cells
2,
4,
# 2D cells
3,
4,
6,
8,
# 3D cells
8,
8,
4,
4,
]
nfaces = [
# 0D cells
0,
0,
# 1D cells
0,
0,
# 2D cells
0,
0,
0,
0,
# 3D cells
6,
6,
4,
4,
]
nedges = [
# 0D cells
0,
0,
# 1D cells
0,
0,
# 2D cells
3,
4,
6,
8,
# 3D cells
12,
12,
6,
6,
]
cell_ids = list(map(repr, types))
def test_bad_init():
with pytest.raises(TypeError, match="must be a vtkCell"):
_ = Cell(1)
@pytest.mark.parametrize("grid", grids, ids=ids)
def test_cell_attribute(grid):
assert isinstance(grid.cell, GeneratorType)
assert all(issubclass(type(cell), Cell) for cell in grid.cell)
@pytest.mark.parametrize("grid", grids, ids=ids)
def test_cell_point_ids(grid):
# Test that the point_ids for all cells in the grid are unique,
# which is not the case when using the GetCell(i) method of DataSet.
# See https://vtk.org/doc/nightly/html/classvtkDataSet.html#a711ed1ebb7bdf4a4e2ed6896081cd1b2
point_ids = {frozenset(c.point_ids) for c in grid.cell}
assert len(point_ids) == grid.n_cells
def test_cell_get_cell():
hexbeam = grids[0]
with pytest.raises(IndexError, match='Invalid index'):
hexbeam.get_cell(hexbeam.n_cells)
assert isinstance(hexbeam.get_cell(0), pv.Cell)
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_type_is_inside_enum(cell):
assert cell.type in CellType
@pytest.mark.parametrize(("cell", "type_"), zip(cells, types), ids=cell_ids)
def test_cell_type(cell, type_):
assert cell.type == type_
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_is_linear(cell):
assert cell.is_linear
@pytest.mark.parametrize(("cell", "dim"), zip(cells, dims), ids=cell_ids)
def test_cell_dimension(cell, dim):
assert cell.dimension == dim
@pytest.mark.parametrize(("cell", "np"), zip(cells, npoints), ids=cell_ids)
def test_cell_n_points(cell, np):
assert cell.n_points == np
@pytest.mark.parametrize(("cell", "nf"), zip(cells, nfaces), ids=cell_ids)
def test_cell_n_faces(cell, nf):
assert cell.n_faces == nf
@pytest.mark.parametrize(("cell", "ne"), zip(cells, nedges), ids=cell_ids)
def test_cell_n_edges(cell, ne):
assert cell.n_edges == ne
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_get_edges(cell):
assert all(cell.get_edge(i).type == CellType.LINE for i in range(cell.n_edges))
with pytest.raises(IndexError, match='Invalid index'):
cell.get_edge(cell.n_edges)
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_edges(cell):
assert all(edge.type == CellType.LINE for edge in cell.edges)
def test_cell_no_field_data():
with pytest.raises(NotImplementedError, match='does not support field data'):
cells[0].add_field_data([1, 2, 3], 'field_data')
with pytest.raises(NotImplementedError, match='does not support field data'):
cells[0].clear_field_data()
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_copy_generic(cell):
cell = cell.copy()
cell_copy = cell.copy(deep=True)
assert cell_copy == cell
cell_copy.points[:] = 1000
assert cell_copy != cell
cell_copy = cell.copy(deep=False)
assert cell_copy == cell
cell_copy.points[:] = 1000
assert cell_copy == cell
def test_cell_copy():
cell = example_cells.Hexahedron().get_cell(0).get_face(0)
assert isinstance(cell, pv.Cell)
cell_copy = cell.copy(deep=True)
assert cell_copy == cell
cell_copy.points[:] = 0
assert cell_copy != cell
cell_copy = cell.copy(deep=False)
assert cell_copy == cell
cell_copy.points[:] = 0
assert cell_copy == cell
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_edges_point_ids(cell):
point_ids = {frozenset(cell.get_edge(i).point_ids) for i in range(cell.n_edges)}
assert len(point_ids) == cell.n_edges
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_faces_point_ids(cell):
point_ids = {frozenset(cell.get_face(i).point_ids) for i in range(cell.n_faces)}
assert len(point_ids) == cell.n_faces
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_faces(cell):
if cell.n_faces:
assert cell.get_face(0) == cell.faces[0]
assert cell.get_face(1) != cell.faces[0]
else:
with pytest.raises(IndexError, match='Invalid index'):
cell.get_face(0)
@pytest.mark.parametrize("grid", grids, ids=ids)
def test_cell_bounds(grid):
assert isinstance(grid.get_cell(0).bounds, tuple)
assert all(bc >= bg for bc, bg in zip(grid.get_cell(0).bounds[::2], grid.bounds[::2]))
assert all(bc <= bg for bc, bg in zip(grid.get_cell(0).bounds[1::2], grid.bounds[1::2]))
@pytest.mark.parametrize("grid", grids, ids=ids)
def test_cell_center(grid):
center = grid.get_cell(0).center
bounds = grid.get_cell(0).bounds
assert isinstance(center, tuple)
assert bounds[0] <= center[0] <= bounds[1]
assert bounds[2] <= center[1] <= bounds[3]
assert bounds[4] <= center[2] <= bounds[5]
def test_cell_center_value():
points = [[0, 0, 0], [1, 0, 0], [0.5, np.sqrt(3) / 2, 0]]
cell = [3, 0, 1, 2]
mesh = pv.PolyData(points, cell)
assert np.allclose(mesh.get_cell(0).center, [0.5, np.sqrt(3) / 6, 0.0], rtol=1e-8, atol=1e-8)
@pytest.mark.parametrize(("cell", "type_"), zip(cells, types), ids=cell_ids)
def test_str(cell, type_):
assert str(type_) in str(cell)
@pytest.mark.parametrize(("cell", "type_"), zip(cells, types), ids=cell_ids)
def test_repr(cell, type_):
assert str(type_) in repr(cell)
@pytest.mark.parametrize("cell", cells, ids=cell_ids)
def test_cell_points(cell):
points = cell.points
assert isinstance(points, np.ndarray)
assert points.ndim == 2
assert points.shape[0] > 0
assert points.shape[1] == 3
@pytest.mark.parametrize("cell", cells)
def test_cell_cast_to_unstructured_grid(cell):
grid = cell.cast_to_unstructured_grid()
assert grid.n_cells == 1
assert grid.get_cell(0) == cell
assert grid.get_cell(0).type == cell.type
@pytest.mark.parametrize("cell", cells)
def test_cell_cast_to_polydata(cell):
if cell.dimension == 3:
with pytest.raises(
ValueError,
match=f"3D cells cannot be cast to PolyData: got cell type {cell.type}",
):
cell.cast_to_polydata()
else:
poly = cell.cast_to_polydata()
assert poly.n_cells == 1
assert poly.get_cell(0) == cell
assert poly.get_cell(0).type == cell.type
CELL_LIST = [3, 0, 1, 2, 3, 3, 4, 5]
NCELLS = 2
FCONTIG_ARR = np.array(np.vstack(([3, 0, 1, 2], [3, 3, 4, 5])), order='F')
@pytest.mark.parametrize(
'cells',
[
CELL_LIST,
np.array(CELL_LIST, np.int16),
np.array(CELL_LIST, np.int32),
np.array(CELL_LIST, np.int64),
FCONTIG_ARR,
],
)
def test_init_cell_array(cells):
cell_array = pv.core.cell.CellArray(cells)
assert np.allclose(np.array(cells).ravel(), cell_array.cells)
assert cell_array.n_cells == cell_array.GetNumberOfCells() == NCELLS
CONNECTIVITY_LIST = [0, 1, 2, 3, 4, 5]
OFFSETS_LIST = [0, 3, 6]
@pytest.mark.parametrize(
'offsets',
[
OFFSETS_LIST,
np.array(OFFSETS_LIST, np.int16),
np.array(OFFSETS_LIST, np.int32),
np.array(OFFSETS_LIST, np.int64),
],
)
@pytest.mark.parametrize(
'connectivity',
[
CONNECTIVITY_LIST,
np.array(CONNECTIVITY_LIST, np.int16),
np.array(CONNECTIVITY_LIST, np.int32),
np.array(CONNECTIVITY_LIST, np.int64),
],
)
@pytest.mark.parametrize('deep', [False, True])
def test_init_cell_array_from_arrays(offsets, connectivity, deep):
cell_array = pv.core.cell.CellArray.from_arrays(offsets, connectivity, deep=deep)
assert np.array_equal(np.array(connectivity), cell_array.connectivity_array)
assert np.array_equal(np.array(offsets), cell_array.offset_array)
assert cell_array.n_cells == cell_array.GetNumberOfCells() == len(offsets) - 1
REGULAR_CELL_LIST = [[0, 1, 2], [3, 4, 5]]
@pytest.mark.parametrize(
'cells',
[
REGULAR_CELL_LIST,
np.array(REGULAR_CELL_LIST, np.int16),
np.array(REGULAR_CELL_LIST, np.int32),
np.array(REGULAR_CELL_LIST, np.int64),
np.array(np.vstack(REGULAR_CELL_LIST), order='F'),
],
)
@pytest.mark.parametrize('deep', [False, True])
def test_init_cell_array_from_regular_cells(cells, deep):
cell_array = pv.core.cell.CellArray.from_regular_cells(cells, deep=deep)
assert np.array_equal(np.array(cells), cell_array.regular_cells)
assert cell_array.n_cells == cell_array.GetNumberOfCells() == len(cells)
def test_set_shallow_regular_cells():
points = [[1.0, 1, 1], [-1, 1, -1], [1, -1, -1], [-1, -1, 1]]
faces = [[0, 1, 2], [1, 3, 2], [0, 2, 3], [0, 3, 1]]
meshes = [pv.PolyData.from_regular_faces(points, faces, deep=False) for _ in range(2)]
for m in meshes:
assert np.array_equal(m.regular_faces, faces)
def test_numpy_to_idarr_bool():
mask = np.ones(10, np.bool_)
idarr = numpy_to_idarr(mask)
assert np.allclose(mask.nonzero()[0], vtk_to_numpy(idarr))
def test_cell_types():
cell_types = [
"EMPTY_CELL",
"VERTEX",
"POLY_VERTEX",
"LINE",
"POLY_LINE",
"TRIANGLE",
"TRIANGLE_STRIP",
"POLYGON",
"PIXEL",
"QUAD",
"TETRA",
"VOXEL",
"HEXAHEDRON",
"WEDGE",
"PYRAMID",
"PENTAGONAL_PRISM",
"HEXAGONAL_PRISM",
"QUADRATIC_EDGE",
"QUADRATIC_TRIANGLE",
"QUADRATIC_QUAD",
"QUADRATIC_POLYGON",
"QUADRATIC_TETRA",
"QUADRATIC_HEXAHEDRON",
"QUADRATIC_WEDGE",
"QUADRATIC_PYRAMID",
"BIQUADRATIC_QUAD",
"TRIQUADRATIC_HEXAHEDRON",
"TRIQUADRATIC_PYRAMID",
"QUADRATIC_LINEAR_QUAD",
"QUADRATIC_LINEAR_WEDGE",
"BIQUADRATIC_QUADRATIC_WEDGE",
"BIQUADRATIC_QUADRATIC_HEXAHEDRON",
"BIQUADRATIC_TRIANGLE",
"CUBIC_LINE",
"CONVEX_POINT_SET",
"POLYHEDRON",
"PARAMETRIC_CURVE",
"PARAMETRIC_SURFACE",
"PARAMETRIC_TRI_SURFACE",
"PARAMETRIC_QUAD_SURFACE",
"PARAMETRIC_TETRA_REGION",
"PARAMETRIC_HEX_REGION",
"HIGHER_ORDER_EDGE",
"HIGHER_ORDER_TRIANGLE",
"HIGHER_ORDER_QUAD",
"HIGHER_ORDER_POLYGON",
"HIGHER_ORDER_TETRAHEDRON",
"HIGHER_ORDER_WEDGE",
"HIGHER_ORDER_PYRAMID",
"HIGHER_ORDER_HEXAHEDRON",
"LAGRANGE_CURVE",
"LAGRANGE_TRIANGLE",
"LAGRANGE_QUADRILATERAL",
"LAGRANGE_TETRAHEDRON",
"LAGRANGE_HEXAHEDRON",
"LAGRANGE_WEDGE",
"LAGRANGE_PYRAMID",
"BEZIER_CURVE",
"BEZIER_TRIANGLE",
"BEZIER_QUADRILATERAL",
"BEZIER_TETRAHEDRON",
"BEZIER_HEXAHEDRON",
"BEZIER_WEDGE",
"BEZIER_PYRAMID",
]
for cell_type in cell_types:
if hasattr(vtk, "VTK_" + cell_type):
assert getattr(pv.CellType, cell_type) == getattr(vtk, 'VTK_' + cell_type)
def test_n_cells_deprecated():
with pytest.warns(pv.PyVistaDeprecationWarning):
_ = pv.core.cell.CellArray([3, 0, 1, 2], n_cells=1)
if pv._version.version_info >= (0, 47):
raise RuntimeError("Convert `n_cells` deprecation warning to error")
if pv._version.version_info >= (0, 48):
raise RuntimeError("Remove `n_cells` constructor kwarg")
@pytest.mark.parametrize('deep', [True, False])
def test_deep_deprecated(deep: bool):
with pytest.warns(pv.PyVistaDeprecationWarning):
_ = pv.core.cell.CellArray([3, 0, 1, 2], deep=deep)
if pv._version.version_info >= (0, 47):
raise RuntimeError("Convert `deep` deprecation warning to error")
if pv._version.version_info >= (0, 48):
raise RuntimeError("Remove `deep` constructor kwarg")
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