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from __future__ import annotations
import importlib
import os
from pathlib import Path
import platform
import numpy as np
import pytest
import pyvista as pv
from pyvista import examples
from pyvista.core.utilities.fileio import _try_imageio_imread
from pyvista.examples.downloads import download_file
HAS_IMAGEIO = True
try:
import imageio
except ModuleNotFoundError:
HAS_IMAGEIO = False
pytestmark = pytest.mark.skipif(
platform.system() == 'Darwin',
reason='MacOS testing on Azure fails when downloading',
)
skip_windows = pytest.mark.skipif(os.name == 'nt', reason='Test fails on Windows')
# test for i386/i486/i586/i686
xfail_i386 = pytest.mark.xfail(
platform.machine()[0]+platform.machine()[2:] == 'i86',
reason=f"test HTTP requests are refused on {platform.machine()}"
)
def test_get_reader_fail(tmp_path):
with pytest.raises(ValueError): # noqa: PT011
pv.get_reader("not_a_supported_file.no_data")
match = "`pyvista.get_reader` does not support reading from directory:\n\t"
with pytest.raises(ValueError, match=match):
pv.get_reader(str(tmp_path))
def test_reader_invalid_file():
# cannot use the BaseReader
with pytest.raises(FileNotFoundError, match='does not exist'):
pv.DICOMReader('dummy/')
def test_xmlimagedatareader(tmpdir):
tmpfile = tmpdir.join("temp.vti")
mesh = pv.ImageData()
mesh.save(tmpfile.strpath)
reader = pv.get_reader(tmpfile.strpath)
assert reader.path == tmpfile.strpath
new_mesh = reader.read()
assert isinstance(new_mesh, pv.ImageData)
assert new_mesh.n_points == mesh.n_points
assert new_mesh.n_cells == mesh.n_cells
def test_xmlrectilineargridreader(tmpdir):
tmpfile = tmpdir.join("temp.vtr")
mesh = pv.RectilinearGrid()
mesh.save(tmpfile.strpath)
reader = pv.get_reader(tmpfile.strpath)
assert reader.path == tmpfile.strpath
new_mesh = reader.read()
assert isinstance(new_mesh, pv.RectilinearGrid)
assert new_mesh.n_points == mesh.n_points
assert new_mesh.n_cells == mesh.n_cells
def test_xmlunstructuredgridreader(tmpdir):
tmpfile = tmpdir.join("temp.vtu")
mesh = pv.UnstructuredGrid()
mesh.save(tmpfile.strpath)
reader = pv.get_reader(tmpfile.strpath)
assert reader.path == tmpfile.strpath
new_mesh = reader.read()
assert isinstance(new_mesh, pv.UnstructuredGrid)
assert new_mesh.n_points == mesh.n_points
assert new_mesh.n_cells == mesh.n_cells
def test_xmlpolydatareader(tmpdir):
tmpfile = tmpdir.join("temp.vtp")
mesh = pv.Sphere()
mesh.save(tmpfile.strpath)
reader = pv.get_reader(tmpfile.strpath)
assert reader.path == tmpfile.strpath
new_mesh = reader.read()
assert isinstance(new_mesh, pv.PolyData)
assert new_mesh.n_points == mesh.n_points
assert new_mesh.n_cells == mesh.n_cells
def test_xmlstructuredgridreader(tmpdir):
tmpfile = tmpdir.join("temp.vts")
mesh = pv.StructuredGrid()
mesh.save(tmpfile.strpath)
reader = pv.get_reader(tmpfile.strpath)
assert reader.path == tmpfile.strpath
new_mesh = reader.read()
assert isinstance(new_mesh, pv.StructuredGrid)
assert new_mesh.n_points == mesh.n_points
assert new_mesh.n_cells == mesh.n_cells
def test_xmlmultiblockreader(tmpdir):
tmpfile = tmpdir.join("temp.vtm")
mesh = pv.MultiBlock([pv.Sphere() for i in range(5)])
mesh.save(tmpfile.strpath)
reader = pv.get_reader(tmpfile.strpath)
assert reader.path == tmpfile.strpath
new_mesh = reader.read()
assert isinstance(new_mesh, pv.MultiBlock)
assert new_mesh.n_blocks == mesh.n_blocks
for i in range(new_mesh.n_blocks):
assert new_mesh[i].n_points == mesh[i].n_points
assert new_mesh[i].n_cells == mesh[i].n_cells
def test_reader_cell_point_data(tmpdir):
tmpfile = tmpdir.join("temp.vtp")
mesh = pv.Sphere()
mesh['height'] = mesh.points[:, 1]
mesh['id'] = np.arange(mesh.n_cells)
mesh.save(tmpfile.strpath)
# mesh has an additional 'Normals' point data array
reader = pv.get_reader(tmpfile.strpath)
assert reader.number_cell_arrays == 1
assert reader.number_point_arrays == 2
assert reader.cell_array_names == ['id']
assert reader.point_array_names == ['Normals', 'height']
assert reader.all_cell_arrays_status == {'id': True}
assert reader.all_point_arrays_status == {'Normals': True, 'height': True}
assert reader.cell_array_status('id') is True
assert reader.point_array_status('Normals') is True
reader.disable_all_cell_arrays()
assert reader.cell_array_status('id') is False
reader.disable_all_point_arrays()
assert reader.all_point_arrays_status == {'Normals': False, 'height': False}
reader.enable_all_cell_arrays()
assert reader.cell_array_status('id') is True
reader.enable_all_point_arrays()
assert reader.all_point_arrays_status == {'Normals': True, 'height': True}
reader.disable_cell_array('id')
assert reader.cell_array_status('id') is False
reader.disable_point_array('Normals')
assert reader.point_array_status('Normals') is False
reader.enable_cell_array('id')
assert reader.cell_array_status('id') is True
reader.enable_point_array('Normals')
assert reader.point_array_status('Normals') is True
@xfail_i386
def test_ensightreader_arrays():
filename = examples.download_backward_facing_step(load=False)
reader = pv.get_reader(filename)
assert reader.path == filename
assert reader.number_cell_arrays == 9
assert reader.number_point_arrays == 0
assert reader.cell_array_names == [
'v2',
'nut',
'k',
'nuTilda',
'p',
'omega',
'f',
'epsilon',
'U',
]
assert reader.point_array_names == []
reader.disable_all_cell_arrays()
reader.enable_cell_array('k')
assert reader.all_cell_arrays_status == {
'v2': False,
'nut': False,
'k': True,
'nuTilda': False,
'p': False,
'omega': False,
'f': False,
'epsilon': False,
'U': False,
}
mesh = reader.read()
assert isinstance(mesh, pv.MultiBlock)
for i in range(mesh.n_blocks):
assert all([mesh[i].n_points, mesh[i].n_cells])
assert mesh[i].array_names == ['k']
# re-enable all cell arrays and read again
reader.enable_all_cell_arrays()
all_mesh = reader.read()
assert isinstance(all_mesh, pv.MultiBlock)
for i in range(all_mesh.n_blocks):
assert all([all_mesh[i].n_points, all_mesh[i].n_cells])
assert all_mesh[i].array_names == [
'v2',
'nut',
'k',
'nuTilda',
'p',
'omega',
'f',
'epsilon',
'U',
]
@xfail_i386
def test_ensightreader_timepoints():
filename = examples.download_naca(load=False)
reader = pv.get_reader(filename)
assert reader.path == filename
assert reader.number_time_points == 2
assert reader.time_values == [1.0, 3.0]
assert reader.time_point_value(0) == 1.0
assert reader.time_point_value(1) == 3.0
assert reader.active_time_value == 1.0
mesh_1 = reader.read()
reader.set_active_time_value(3.0)
assert reader.active_time_value == 3.0
mesh_3 = reader.read()
# assert all the data is different
for m_1, m_3 in zip(mesh_1, mesh_3):
assert not all(m_1['DENS'] == m_3['DENS'])
reader.set_active_time_point(0)
assert reader.active_time_value == 1.0
with pytest.raises(ValueError, match="Not a valid time"):
reader.set_active_time_value(1000.0)
@xfail_i386
def test_ensightreader_time_sets():
filename = examples.download_lshape(load=False)
reader = pv.get_reader(filename)
assert reader.active_time_set == 0
reader.set_active_time_set(1)
assert reader.number_time_points == 11
mesh = reader.read()["all"]
assert reader.number_time_points == 11
assert np.isclose(mesh["displacement"][1, 1], 0.0, 1e-10)
reader.set_active_time_value(reader.time_values[-1])
mesh = reader.read()["all"]
assert np.isclose(mesh["displacement"][1, 1], 0.0028727285, 1e-10)
reader.set_active_time_set(0)
assert reader.number_time_points == 1
with pytest.raises(IndexError, match="Time set index"):
reader.set_active_time_set(2)
@xfail_i386
def test_dcmreader(tmpdir):
# Test reading directory (image stack)
directory = examples.download_dicom_stack(load=False)
reader = pv.get_reader(directory)
assert directory in str(reader)
assert isinstance(reader, pv.DICOMReader)
assert reader.path == directory
mesh = reader.read()
assert isinstance(mesh, pv.ImageData)
assert all([mesh.n_points, mesh.n_cells])
# Test reading single file (*.dcm)
filename = str(Path(directory) / "1-1.dcm")
reader = pv.get_reader(filename)
assert isinstance(reader, pv.DICOMReader)
assert reader.path == filename
mesh = reader.read()
assert isinstance(mesh, pv.ImageData)
assert all([mesh.n_points, mesh.n_cells])
def test_plyreader():
filename = examples.spherefile
reader = pv.get_reader(filename)
assert isinstance(reader, pv.PLYReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_objreader():
filename = examples.download_doorman(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.OBJReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_stlreader():
filename = examples.download_gears(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.STLReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_tecplotreader():
filename = examples.download_tecplot_ascii(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.TecplotReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh[0].n_points, mesh[0].n_cells])
def test_vtkreader():
filename = examples.hexbeamfile
reader = pv.get_reader(filename)
assert isinstance(reader, pv.VTKDataSetReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_byureader():
filename = examples.download_teapot(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.BYUReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_facetreader():
filename = examples.download_clown(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.FacetReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_plot3dmetareader():
filename = download_file('multi.p3d')
download_file('multi-bin.xyz')
download_file('multi-bin.q')
download_file('multi-bin.f')
reader = pv.get_reader(filename)
assert isinstance(reader, pv.Plot3DMetaReader)
assert reader.path == filename
mesh = reader.read()
for m in mesh:
assert all([m.n_points, m.n_cells])
@xfail_i386
def test_multiblockplot3dreader():
filename = download_file('multi-bin.xyz')
q_filename = download_file('multi-bin.q')
reader = pv.MultiBlockPlot3DReader(filename)
assert reader.path == filename
mesh = reader.read()
for m in mesh:
assert all([m.n_points, m.n_cells])
assert len(m.array_names) == 0
# Reader doesn't yet support reusability
reader = pv.MultiBlockPlot3DReader(filename)
reader.add_q_files(q_filename)
reader.add_function(112) # add by int
reader.add_function(pv.reader.Plot3DFunctionEnum.PRESSURE_GRADIENT) # add by enum
reader.add_function(reader.KINETIC_ENERGY) # add by class variable (alias to enum value)
reader.add_function(reader.ENTROPY) # add ENTROPY by class variable
reader.remove_function(170) # remove ENTROPY by int
reader.add_function(reader.ENTROPY)
reader.remove_function(reader.ENTROPY) # remove by class variable
mesh = reader.read()
for m in mesh:
assert len(m.array_names) > 0
assert 'MachNumber' in mesh[0].point_data
assert 'PressureGradient' in mesh[0].point_data
assert 'KineticEnergy' in mesh[0].point_data
assert 'Entropy' not in mesh[0].point_data
reader = pv.MultiBlockPlot3DReader(filename)
reader.add_q_files([q_filename])
mesh = reader.read()
for m in mesh:
assert len(m.array_names) > 0
reader = pv.MultiBlockPlot3DReader(filename)
# get/set of `auto_detect_format`
reader.auto_detect_format = False
assert reader.auto_detect_format is False
reader.auto_detect_format = True
assert reader.auto_detect_format is True
# get/set of `preserve_intermediate_functions`
reader.preserve_intermediate_functions = False
assert reader.preserve_intermediate_functions is False
reader.preserve_intermediate_functions = True
assert reader.preserve_intermediate_functions is True
# get/set of `gamma`
reader.gamma = 1.5
assert reader.gamma == 1.5
reader.gamma = 99
assert reader.gamma == 99
# get/set of `r_gas_constant`
reader.r_gas_constant = 5
assert reader.r_gas_constant == 5
reader.r_gas_constant = 10
assert reader.r_gas_constant == 10
# check removing all functions
reader = pv.MultiBlockPlot3DReader(filename)
reader.add_q_files(q_filename)
reader.add_function(reader.ENTROPY)
reader.remove_all_functions()
mesh_no_functions = reader.read()
assert 'ENTROPY' not in mesh_no_functions[0].point_data
@xfail_i386
def test_binarymarchingcubesreader():
filename = examples.download_pine_roots(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.BinaryMarchingCubesReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
read_mesh = pv.read(filename)
assert mesh == read_mesh
@xfail_i386
def test_pvdreader():
filename = examples.download_wavy(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.PVDReader)
assert isinstance(reader.reader, pv.core.utilities.reader._PVDReader)
assert reader.path == filename
assert reader.number_time_points == 15
assert reader.time_point_value(1) == 1.0
assert np.array_equal(reader.time_values, np.arange(0, 15, dtype=float))
assert reader.active_time_value == reader.time_values[0]
active_datasets = reader.active_datasets
assert len(active_datasets) == 1
active_dataset0 = active_datasets[0]
assert active_dataset0.time == 0.0
assert active_dataset0.path == "wavy/wavy00.vts"
assert active_dataset0.group == ""
assert active_dataset0.part == 0
assert len(reader.datasets) == len(reader.time_values)
active_readers = reader.active_readers
assert len(active_readers) == 1
active_reader = active_readers[0]
assert isinstance(active_reader, pv.XMLStructuredGridReader)
reader.set_active_time_value(1.0)
assert reader.active_time_value == 1.0
reader.set_active_time_point(2)
assert reader.active_time_value == 2.0
mesh = reader.read()
assert isinstance(mesh, pv.MultiBlock)
assert len(mesh) == 1
assert isinstance(mesh[0], pv.StructuredGrid)
@xfail_i386
def test_pvdreader_no_time_group():
filename = examples.download_dual_sphere_animation(load=False) # download all the files
# Use a pvd file that has no timestep or group and two parts.
filename = str(Path(filename).parent / 'dualSphereNoTime.pvd')
reader = pv.PVDReader(filename)
assert reader.time_values == [0.0]
assert reader.active_time_value == 0.0
assert len(reader.active_datasets) == 2
for i, dataset in enumerate(reader.active_datasets):
assert dataset.time == 0.0
assert dataset.group is None
assert dataset.part == i
@skip_windows
@xfail_i386
def test_pvdreader_no_part_group():
filename = examples.download_dual_sphere_animation(load=False) # download all the files
# Use a pvd file that has no parts and with timesteps.
filename = str(Path(filename).parent / 'dualSphereAnimation4NoPart.pvd')
reader = pv.PVDReader(filename)
assert reader.active_time_value == 0.0
assert len(reader.active_datasets) == 1
reader.set_active_time_value(1.0)
assert len(reader.active_datasets) == 2
for dataset in reader.active_datasets:
assert dataset.time == 1.0
assert dataset.group == ""
assert dataset.part == 0
def get_cavity_reader():
filename = examples.download_cavity(load=False)
return pv.get_reader(filename)
@xfail_i386
def test_openfoamreader_arrays_time():
reader = get_cavity_reader()
assert isinstance(reader, pv.OpenFOAMReader)
assert reader.number_point_arrays == 0
assert reader.number_cell_arrays == 2
assert reader.number_time_points == 6
assert reader.time_values == [0.0, 0.5, 1.0, 1.5, 2.0, 2.5]
@xfail_i386
def test_openfoamreader_active_time():
# vtk < 9.1.0 does not support
if pv.vtk_version_info < (9, 1, 0):
pytest.xfail("OpenFOAMReader GetTimeValue missing on vtk<9.1.0")
reader = get_cavity_reader()
assert reader.active_time_value == 0.0
reader.set_active_time_point(1)
assert reader.active_time_value == 0.5
reader.set_active_time_value(1.0)
assert reader.active_time_value == 1.0
with pytest.raises(
ValueError,
match=r'Not a valid .* time values: \[0.0, 0.5, 1.0, 1.5, 2.0, 2.5\]',
):
reader.set_active_time_value(1000)
@xfail_i386
def test_openfoamreader_read_data_time_value():
reader = get_cavity_reader()
reader.set_active_time_value(0.0)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 0.0, 0.0, 1e-10)
reader.set_active_time_value(0.5)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.524879113887437e-05, 0.0, 1e-10)
reader.set_active_time_value(1.0)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.5253094867803156e-05, 0.0, 1e-10)
reader.set_active_time_value(1.5)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.525657641352154e-05, 0.0, 1e-10)
reader.set_active_time_value(2.0)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.5258551836013794e-05, 0.0, 1e-10)
reader.set_active_time_value(2.5)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.525951953837648e-05, 0.0, 1e-10)
@xfail_i386
def test_openfoamreader_read_data_time_point():
reader = get_cavity_reader()
reader.set_active_time_point(0)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 0.0, 0.0, 1e-10)
reader.set_active_time_point(1)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.524879113887437e-05, 0.0, 1e-10)
reader.set_active_time_point(2)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.5253094867803156e-05, 0.0, 1e-10)
reader.set_active_time_point(3)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.525657641352154e-05, 0.0, 1e-10)
reader.set_active_time_point(4)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.5258551836013794e-05, 0.0, 1e-10)
reader.set_active_time_point(5)
data = reader.read()["internalMesh"]
assert np.isclose(data.cell_data["U"][:, 1].mean(), 4.525951953837648e-05, 0.0, 1e-10)
@pytest.mark.skipif(
pv.vtk_version_info > (9, 3),
reason="polyhedra decomposition was removed after 9.3",
)
@xfail_i386
def test_openfoam_decompose_polyhedra():
reader = get_cavity_reader()
reader.decompose_polyhedra = False
assert reader.decompose_polyhedra is False
reader.decompose_polyhedra = True
assert reader.decompose_polyhedra is True
@xfail_i386
def test_openfoam_skip_zero_time():
reader = get_cavity_reader()
reader.skip_zero_time = True
assert reader.skip_zero_time is True
assert 0.0 not in reader.time_values
# Test from 'True' to 'False'
reader.skip_zero_time = False
assert reader.skip_zero_time is False
assert 0.0 in reader.time_values
# Test from 'False' to 'True'
reader.skip_zero_time = True
assert reader.skip_zero_time is True
assert 0.0 not in reader.time_values
@xfail_i386
def test_openfoam_cell_to_point_default():
reader = get_cavity_reader()
mesh = reader.read()
assert reader.cell_to_point_creation is True
assert mesh[0].n_arrays == 4
reader = get_cavity_reader()
reader.cell_to_point_creation = False
assert reader.cell_to_point_creation is False
mesh = reader.read()
assert mesh[0].n_arrays == 2
reader = get_cavity_reader()
mesh = reader.read()
reader.cell_to_point_creation = True
assert reader.cell_to_point_creation is True
assert mesh[0].n_arrays == 4
@xfail_i386
def test_openfoam_patch_arrays():
# vtk version 9.1.0 changed the way patch names are handled.
vtk_version = pv.vtk_version_info
if vtk_version >= (9, 1, 0):
patch_array_key = 'boundary'
reader_patch_prefix = 'patch/'
else:
patch_array_key = 'Patches'
reader_patch_prefix = ''
reader = get_cavity_reader()
assert reader.number_patch_arrays == 4
assert reader.patch_array_names == [
'internalMesh',
f'{reader_patch_prefix}movingWall',
f'{reader_patch_prefix}fixedWalls',
f'{reader_patch_prefix}frontAndBack',
]
assert reader.all_patch_arrays_status == {
'internalMesh': True,
f'{reader_patch_prefix}movingWall': True,
f'{reader_patch_prefix}fixedWalls': True,
f'{reader_patch_prefix}frontAndBack': True,
}
# first only read in 'internalMesh'
for patch_array in reader.patch_array_names[1:]:
reader.disable_patch_array(patch_array)
assert reader.all_patch_arrays_status == {
'internalMesh': True,
f'{reader_patch_prefix}movingWall': False,
f'{reader_patch_prefix}fixedWalls': False,
f'{reader_patch_prefix}frontAndBack': False,
}
mesh = reader.read()
assert mesh.n_blocks == 1
assert patch_array_key not in mesh.keys()
# now read in one more patch
reader = get_cavity_reader()
reader.disable_all_patch_arrays()
reader.enable_patch_array('internalMesh')
reader.enable_patch_array(f'{reader_patch_prefix}fixedWalls')
mesh = reader.read()
assert mesh.n_blocks == 2
assert patch_array_key in mesh.keys()
assert mesh[patch_array_key].keys() == ['fixedWalls']
# check multiple patch arrays without 'internalMesh'
reader = get_cavity_reader()
reader.disable_patch_array('internalMesh')
mesh = reader.read()
assert mesh.n_blocks == 1
assert patch_array_key in mesh.keys()
assert mesh[patch_array_key].keys() == ['movingWall', 'fixedWalls', 'frontAndBack']
@xfail_i386
def test_openfoam_case_type():
reader = get_cavity_reader()
reader.case_type = 'decomposed'
assert reader.case_type == 'decomposed'
reader.case_type = 'reconstructed'
assert reader.case_type == 'reconstructed'
with pytest.raises(ValueError, match="Unknown case type 'wrong_value'."):
reader.case_type = 'wrong_value'
@pytest.mark.needs_vtk_version(9, 1)
@xfail_i386
def test_read_cgns():
filename = examples.download_cgns_structured(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.CGNSReader)
assert "CGNS" in str(reader)
reader.show_progress()
assert reader._progress_bar is True
assert reader.distribute_blocks in [True, False] # don't insist on a VTK default
reader.distribute_blocks = True
assert reader.distribute_blocks
reader.disable_all_bases()
reader.disable_all_families()
reader.disable_all_cell_arrays()
reader.disable_all_point_arrays()
reader.load_boundary_patch = False
empty_block = reader.read()
assert len(empty_block) == 0
reader.enable_all_bases()
reader.enable_all_families()
reader.enable_all_cell_arrays()
reader.enable_all_point_arrays()
# check can modify unsteady_pattern
orig = reader.unsteady_pattern
reader.unsteady_pattern = not orig
assert reader.unsteady_pattern is not orig
# check can modify vector_3d
orig = reader.vector_3d
reader.vector_3d = not orig
assert reader.vector_3d is not orig
# check can boundary_patch accessible
assert reader.load_boundary_patch in [True, False]
reader.hide_progress()
assert reader._progress_bar is False
block = reader.read()
assert len(block[0]) == 12
# actual block
assert len(block[0][0].cell_data) == 3
assert reader.base_array_names == ['SQNZ']
assert reader.base_array_status('SQNZ') is True
assert reader.family_array_names == ['inflow', 'outflow', 'sym', 'wall']
assert reader.family_array_status('inflow') is True
@xfail_i386
def test_bmpreader():
filename = examples.download_masonry_texture(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.BMPReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_demreader():
filename = examples.download_st_helens(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.DEMReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_jpegreader():
filename = examples.planets.download_mars_surface(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.JPEGReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_meta_image_reader():
filename = examples.download_chest(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.MetaImageReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_nifti_reader():
filename = examples.download_brain_atlas_with_sides(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.NIFTIReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
def test_nrrd_reader():
filename = examples.download_beach(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.NRRDReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_png_reader():
filename = examples.download_vtk_logo(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.PNGReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_pnm_reader():
filename = examples.download_gourds_pnm(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.PNMReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_slc_reader():
filename = examples.download_knee_full(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.SLCReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_tiff_reader():
filename = examples.download_crater_imagery(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.TIFFReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_hdr_reader():
filename = examples.download_parched_canal_4k(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.HDRReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_avsucd_reader():
filename = examples.download_cells_nd(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.AVSucdReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@pytest.mark.needs_vtk_version(9, 1)
def test_hdf_reader():
filename = examples.download_can_crushed_hdf(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.HDFReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
assert mesh.n_points == 6724
assert 'VEL' in mesh.point_data
assert mesh.n_cells == 4800
def test_xdmf_reader():
filename = examples.download_meshio_xdmf(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.XdmfReader)
assert reader.path == filename
assert reader.number_time_points == 5
assert reader.time_values == [0.0, 0.25, 0.5, 0.75, 1.0]
assert reader.time_point_value(0) == 0.0
assert reader.time_point_value(1) == 0.25
assert reader.number_grids == 6
assert reader.number_point_arrays == 2
assert reader.point_array_names == ['phi', 'u']
assert reader.cell_array_names == ['a']
blocks = reader.read()
assert reader.active_time_value == 0.0
assert np.array_equal(blocks['TimeSeries_meshio']['phi'], np.array([0.0, 0.0, 0.0, 0.0]))
reader.set_active_time_value(0.25)
assert reader.active_time_value == 0.25
blocks = reader.read()
assert np.array_equal(blocks['TimeSeries_meshio']['phi'], np.array([0.25, 0.25, 0.25, 0.25]))
reader.set_active_time_value(0.5)
assert reader.active_time_value == 0.5
blocks = reader.read()
assert np.array_equal(blocks['TimeSeries_meshio']['phi'], np.array([0.5, 0.5, 0.5, 0.5]))
reader.set_active_time_value(0.75)
assert reader.active_time_value == 0.75
blocks = reader.read()
assert np.array_equal(blocks['TimeSeries_meshio']['phi'], np.array([0.75, 0.75, 0.75, 0.75]))
reader.set_active_time_value(1.0)
assert reader.active_time_value == 1.0
blocks = reader.read()
assert np.array_equal(blocks['TimeSeries_meshio']['phi'], np.array([1.0, 1.0, 1.0, 1.0]))
reader.set_active_time_point(0)
assert reader.active_time_value == 0.0
with pytest.raises(ValueError, match="Not a valid time"):
reader.set_active_time_value(1000.0)
@pytest.mark.skipif(not HAS_IMAGEIO, reason="Requires imageio")
def test_try_imageio_imread():
img = _try_imageio_imread(examples.mapfile)
assert isinstance(img, (imageio.core.util.Array, np.ndarray))
@pytest.mark.skipif(
pv.vtk_version_info < (9, 1, 0),
reason="Requires VTK>=9.1.0 for a concrete PartitionedDataSetWriter class.",
)
@pytest.mark.xfail(importlib.util.find_spec("paraview"),
reason="paraview provides inconsistent vtk")
def test_xmlpartitioneddatasetreader(tmpdir):
tmpfile = tmpdir.join("temp.vtpd")
partitions = pv.PartitionedDataSet(
[pv.Wavelet(extent=(0, 10, 0, 10, 0, 5)), pv.Wavelet(extent=(0, 10, 0, 10, 5, 10))],
)
partitions.save(tmpfile.strpath)
new_partitions = pv.read(tmpfile.strpath)
assert isinstance(new_partitions, pv.PartitionedDataSet)
assert len(new_partitions) == len(partitions)
for i, new_partition in enumerate(new_partitions):
assert isinstance(new_partition, pv.ImageData)
assert new_partitions[i].n_cells == partitions[i].n_cells
@xfail_i386
@pytest.mark.skipif(
pv.vtk_version_info < (9, 3, 0),
reason="Requires VTK>=9.3.0 for a concrete FLUENTCFFReader class.",
)
def test_fluentcffreader():
filename = examples.download_room_cff(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.FLUENTCFFReader)
assert reader.path == filename
blocks = reader.read()
assert blocks.n_blocks == 1
assert isinstance(blocks[0], pv.UnstructuredGrid)
assert blocks.bounds == (0.0, 4.0, 0.0, 4.0, 0.0, 0.0)
@xfail_i386
def test_gambitreader():
filename = examples.download_prism(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.GambitReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
@pytest.mark.skipif(
pv.vtk_version_info < (9, 1, 0),
reason="Requires VTK>=9.1.0 for a concrete GaussianCubeReader class.",
)
def test_gaussian_cubes_reader():
filename = examples.download_m4_total_density(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.GaussianCubeReader)
assert reader.path == filename
hb_scale = 1.1
b_scale = 10.0
reader.hb_scale = hb_scale
reader.b_scale = b_scale
assert reader.hb_scale == hb_scale
assert reader.b_scale == b_scale
grid = reader.read(grid=True)
assert isinstance(grid, pv.ImageData)
assert all([grid.n_points, grid.n_cells])
poly = reader.read(grid=False)
assert isinstance(poly, pv.PolyData)
assert all([poly.n_points, poly.n_cells])
@xfail_i386
def test_gesignareader():
filename = examples.download_e07733s002i009(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.GESignaReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
@pytest.mark.skipif(
pv.vtk_version_info < (9, 1, 0),
reason="Requires VTK>=9.1.0 for a concrete GaussianCubeReader class.",
)
def test_pdbreader():
filename = examples.download_caffeine(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.PDBReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
@xfail_i386
def test_particle_reader():
filename = examples.download_particles(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.ParticleReader)
assert reader.path == filename
reader.endian = "BigEndian"
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
reader.endian = "LittleEndian"
with pytest.raises(ValueError, match="Invalid endian:"):
reader.endian = "InvalidEndian"
@xfail_i386
def test_prostar_reader():
filename = examples.download_prostar(load=False)
reader = pv.get_reader(filename)
assert isinstance(reader, pv.ProStarReader)
assert reader.path == filename
mesh = reader.read()
assert all([mesh.n_points, mesh.n_cells])
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