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# -*- coding: utf-8 -*-
# Copyright 2007-2023 The HyperSpy developers
#
# This file is part of RosettaSciIO.
#
# RosettaSciIO is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# RosettaSciIO is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with RosettaSciIO. If not, see <https://www.gnu.org/licenses/#GPL>.
# INFORMATION ABOUT THE SEMPER FORMAT LABEL:
# Picture labels consist of a sequence of bytes
# ---------------------------------------------
# v61:256B | v7:at least 256B, rounded up to multiple of block size 64,
# with max set by LNLAB in params.f
# The versions have the same contents for the first 256B, as set out below,
# and referred to as the label 'base'; beyond this, in the label 'extension',
# the structure is deliberately undefined, allowing you to make your own use
# of the additional storage.
#
# From Aug14:
# B1-6 S e m p e r (ic chars)
# 7,8 ncol msb,lsb (BIG-ended)
# 9,10 nrow msb,lsb
# 11,12 nlay msb,lsb
# 13,14 ccol msb,lsb
# 15,16 crow msb,lsb
# 17,18 clay msb,lsb
# 19 class: 1-20
# for image,macro,fou,spec,correln,undef,walsh,histog,plist,lut
# 20 form: 0,1,2,3,4 = byte,i*2,fp,com,i*4 from Aug08
# 21 wp: non-zero if prot
# 22-27 creation year(-1900?),month,day,hour,min,sec
# 28 v61|v7 # chars in range record | 255
# 29-55 v61: min,max values present (ic chars for decimal repn)
# v7: min,max vals as two Fp values in B29-36 (LE ordered)
# followed by 19 unused bytes B37-55
# 56 plist type: 1,2,3 = list,opencurve,closedcurve
# acc to EXAMPD - code appears to use explicit numbers
# 57,58,59 ncol,nrow,nlay hsb
# 60,61,62 ccol,crow,clay hsb
# 63 RealCoords flag (non-zero -> DX,DY,DZ,X0,Y0,Z0,units held as below)
# 64 v61:0 | v7: # blocks in (this) picture label (incl extn)
# 65-67 0 (free at present)
# 68-71 DATA cmd V7 4-byte Fp values, order LITTLE-ended
# 72-75 DATA cmd V6
# 76-79 RealCoord DZ / V5 RealCoord pars as 4-byte Fp values, LITTLE-ended
# 80-83 ... Z0 / V4
# 84-87 ... DY / V3
# 88-91 ... Y0 / V2
# 92-95 ... DX / V1
# 96-99 ... X0 / V0
# 100 # chars in title
# 101-244 title (ic chars)
# 245-248 RealCoord X unit (4 ic chars)
# 249-252 RealCoord Y unit (4 ic chars)
# 253-256 RealCoord Z unit (4 ic chars)
#
# Aug08-Aug14 labels held no RealCoord information, so:
# B63 'free' and zero - flagging absence of RealCoord information
# 101-256 title (12 chars longer than now)
#
# Before Aug08 labels held no hsb for pic sizes, so:
# 57-99 all free/zero except for use by DATA cmd
# 101-256 title (ic chars)
import logging
import struct
import warnings
from collections import OrderedDict
from datetime import datetime
from functools import partial
import numpy as np
from rsciio._docstrings import (
FILENAME_DOC,
LAZY_DOC,
RETURNS_DOC,
SIGNAL_DOC,
)
from rsciio.utils.tools import DTBox, sarray2dict
_logger = logging.getLogger(__name__)
class SemperFormat(object):
"""Class for importing and exporting SEMPER `.unf`-files.
The :class:`~.SemperFormat` class represents a SEMPER binary file format
with a header, which holds additional information. `.unf`-files can be
saved and read from files.
Attributes
----------
data : :class:`~numpy.ndarray` (N=3)
The phase map or magnetization information in a 3D array (with one
slice).
title : string
Title of the file (not to be confused with the filename).
offsets : tuple (N=3) of floats
Offset shifts (in nm) of the grid origin (does not have to start at 0)
in x, y, z.
scales : tuple (N=3) of floats
Grid spacing (nm per pixel) in x, y, z.
units : tuple (N=3) of strings
Units of the grid in x, y, z.
metadata : dictionary
A dictionary of all flags and metadata present in the `.unf`-file.
"""
ICLASS_DICT = {
1: "image",
2: "macro",
3: "fourier",
4: "spectrum",
5: "correlation",
6: None,
7: "walsh",
8: "position list",
9: "histogram",
10: "display look-up table",
}
ICLASS_DICT_INV = {v: k for k, v in ICLASS_DICT.items()}
IFORM_DICT = {0: np.byte, 1: np.int16, 2: np.float32, 3: np.complex64, 4: np.int32}
IFORM_DICT_INV = {v: k for k, v in IFORM_DICT.items()}
HEADER_DTYPES = [
("NCOL", "<i2"),
("NROW", "<i2"),
("NLAY", "<i2"),
("ICLASS", "<i2"),
("IFORM", "<i2"),
("IFLAG", "<i2"),
("IFORM", "<i2"),
]
LABEL_DTYPES = [
("SEMPER", ("<i2", 6)), # Bytes 1-6
("NCOL", ("<i2", 2)), # Bytes 7,8
("NROW", ("<i2", 2)), # Bytes 9,10
("NLAY", ("<i2", 2)), # Bytes 11,12
("ICCOLN", ("<i2", 2)), # Bytes 13,14
("ICROWN", ("<i2", 2)), # Bytes 15,16
("ICLAYN", ("<i2", 2)), # Bytes 17,18
("ICLASS", "<i2"), # Bytes 19
("IFORM", "<i2"), # Bytes 20
("IWP", "<i2"), # Bytes 21
("DATE", ("<i2", 6)), # Bytes 22-27
("NCRANG", "<i2"), # Bytes 28
("RANGE", ("<i2", 27)), # Bytes 29-55
("IPLTYP", "<i2"), # Bytes 56
("NCOLH", "<i2"), # Bytes 57
("NROWH", "<i2"), # Bytes 58
("NLAYH", "<i2"), # Bytes 59
("ICCOLNH", "<i2"), # Bytes 60
("ICROWNH", "<i2"), # Bytes 61
("ICLAYNH", "<i2"), # Bytes 62
("REALCO", "<i2"), # Bytes 63
("NBLOCK", "<i2"), # Bytes 64
("FREE", ("<i2", 3)), # Bytes 65-67
("DATAV6", ("<i2", 4)), # Bytes 68-71
("DATAV7", ("<i2", 4)), # Bytes 72-75
("DZV5", ("<i2", 4)), # Bytes 76-79
("Z0V4", ("<i2", 4)), # Bytes 80-83
("DYV3", ("<i2", 4)), # Bytes 84-87
("Y0V2", ("<i2", 4)), # Bytes 88-91
("DXV1", ("<i2", 4)), # Bytes 92-95
("X0V0", ("<i2", 4)), # Bytes 96-99
("NTITLE", "<i2"), # Bytes 100
("TITLE", ("<i2", 144)), # Bytes 101-244
("XUNIT", ("<i2", 4)), # Bytes 245-248
("YUNIT", ("<i2", 4)), # Bytes 249-252
("ZUNIT", ("<i2", 4)),
] # Bytes 253-256
def __init__(
self,
data,
title="",
offsets=(0.0,) * 3,
scales=(1.0,) * 3,
units=(None,) * 3,
metadata=None,
):
if metadata is None:
metadata = {}
# Make sure data is 3D!
data = data[tuple(None for _ in range(3 - len(data.shape)))]
self.data = data
self.title = title
self.offsets = offsets
self.scales = scales
self.units = units
self.metadata = metadata
_logger.debug("Created " + str(self))
@classmethod
def _read_label(cls, unf_file):
unpack = partial(
unpack_from_intbytes, "<f"
) # Unpacking function for 4 byte floats!
rec_length = np.fromfile(unf_file, dtype="<i", count=1)[0] # length of label
label = sarray2dict(np.fromfile(unf_file, dtype=cls.LABEL_DTYPES, count=1))
label["SEMPER"] = "".join([str(chr(label_)) for label_ in label["SEMPER"]])
assert label["SEMPER"] == "Semper"
# Process dimensions:
for key in ["NCOL", "NROW", "NLAY", "ICCOLN", "ICROWN", "ICLAYN"]:
value = (
256**2 * np.int32(label.pop(key + "H"))
+ 256 * label[key][0]
+ label[key][1]
)
label[key] = value
# Process date:
date = "{}-{}-{} {}:{}:{}".format(label["DATE"][0] + 1900, *label["DATE"][1:])
label["DATE"] = date
# Process range:
if label["NCRANG"] == 255:
range_min = unpack(label["RANGE"][:4])
range_max = unpack(label["RANGE"][4:8])
range_string = "{:.6g},{:.6g}".format(range_min, range_max)
else:
range_string = "".join(
[str(chr(label_)) for label_ in label["RANGE"][: label["NCRANG"]]]
)
label["RANGE"] = range_string
# Process real coords:
x0 = unpack(label.pop("X0V0"))
dx = unpack(label.pop("DXV1"))
y0 = unpack(label.pop("Y0V2"))
dy = unpack(label.pop("DYV3"))
z0 = unpack(label.pop("Z0V4"))
dz = unpack(label.pop("DZV5"))
if label["REALCO"] == 1:
label.update(
{"X0V0": x0, "Y0V2": y0, "Z0V4": z0, "DXV1": dx, "DYV3": dy, "DZV5": dz}
)
# Process additional commands (unused, not sure about the purpose):
data_v6 = unpack(label["DATAV6"])
data_v7 = unpack(label["DATAV7"])
label["DATAV6"] = data_v6
label["DATAV7"] = data_v7
# Process title:
title = "".join(
[str(chr(label_)) for label_ in label["TITLE"][: label["NTITLE"]]]
)
label["TITLE"] = title
# Process units:
label["XUNIT"] = "".join([chr(label_) for label_ in label["XUNIT"]]).replace(
"\x00", ""
)
label["YUNIT"] = "".join([chr(label_) for label_ in label["YUNIT"]]).replace(
"\x00", ""
)
label["ZUNIT"] = "".join([chr(label_) for label_ in label["ZUNIT"]]).replace(
"\x00", ""
)
# Sanity check:
assert np.fromfile(unf_file, dtype="<i4", count=1)[0] == rec_length
# Return label:
return label
def _get_label(self):
pack = partial(pack_to_intbytes, "<f") # Packing function for 4 byte floats!
nlay, nrow, ncol = self.data.shape
data, iform = self._check_format(self.data)
title = self.title
# Create label:
label = np.zeros((1,), dtype=self.LABEL_DTYPES)
# Fill label:
label["SEMPER"] = [ord(c) for c in "Semper"]
label["NCOLH"], remain = divmod(ncol, 256**2)
label["NCOL"] = divmod(remain, 256)
label["NROWH"], remain = divmod(nrow, 256**2)
label["NROW"] = divmod(remain, 256)
label["NLAYH"], remain = divmod(nlay, 256**2)
label["NLAY"] = divmod(remain, 256)
iccoln = self.metadata.get("ICCOLN", self.data.shape[2] // 2 + 1)
label["ICCOLNH"], remain = divmod(iccoln, 256**2)
label["ICCOLN"] = divmod(remain, 256)
icrown = self.metadata.get("ICROWN", self.data.shape[1] // 2 + 1)
label["ICROWNH"], remain = divmod(icrown, 256**2)
label["ICROWN"] = divmod(remain, 256)
iclayn = self.metadata.get("ICLAYN", self.data.shape[0] // 2 + 1)
label["ICLAYNH"], remain = divmod(iclayn, 256**2)
label["ICLAYN"] = divmod(remain, 256)
label["ICLASS"] = self.metadata.get("ICLASS", 6) # 6: Undefined!
label["IFORM"] = iform
label["IWP"] = self.metadata.get("IWP", 0) # seems standard
date = self.metadata.get("DATE", "%s" % datetime.now())
year, time = date.split(" ")
date_ints = list(map(int, year.split("-"))) + list(map(int, time.split(":")))
date_ints[0] -= 1900 # Modify year integer!
label["DATE"] = date_ints
range_string = "{:.4g},{:.4g}".format(self.data.min(), self.data.max())
label["NCRANG"] = len(range_string)
label["RANGE"][:, : len(range_string)] = [ord(c) for c in range_string]
label["IPLTYP"] = self.metadata.get("IPLTYP", 248) # seems standard
label["REALCO"] = 1 # Real coordinates are used!
label["NBLOCK"] = 4 # Always 4 64b blocks!
label["FREE"] = [0, 0, 0]
label["DATAV6"] = pack(0.0) # Not used!
label["DATAV7"] = pack(0.0) # Not used!
label["DZV5"] = pack(self.scales[2]) # DZ
label["Z0V4"] = pack(self.offsets[2]) # Z0
label["DYV3"] = pack(self.scales[1]) # DY
label["Y0V2"] = pack(self.offsets[1]) # Y0
label["DXV1"] = pack(self.scales[0]) # DX
label["X0V0"] = pack(self.offsets[0]) # X0
label["NTITLE"] = len(title)
label["TITLE"][:, : len(title)] = [ord(s) for s in title]
xunit = self.units[0] if self.units[0] is not None else ""
label["XUNIT"][:, : len(xunit)] = [ord(c) for c in xunit]
yunit = self.units[0] if self.units[0] is not None else ""
label["YUNIT"][:, : len(yunit)] = [ord(c) for c in yunit]
zunit = self.units[0] if self.units[0] is not None else ""
label["ZUNIT"][:, : len(zunit)] = [ord(c) for c in zunit]
return label
@classmethod
def _check_format(cls, data):
if np.issubdtype(data.dtype, np.int8):
iform = 0 # byte
elif np.issubdtype(data.dtype, np.int16):
iform = 1 # int16
elif np.issubdtype(data.dtype, np.floating) and data.dtype.itemsize <= 4:
data = data.astype(np.float32)
iform = 2 # float (4 byte or less)
elif np.issubdtype(data.dtype, np.complexfloating) and data.dtype.itemsize <= 8:
data = data.astype(np.complex64)
iform = 3 # complex (8 byte or less)
elif np.issubdtype(data.dtype, np.int32):
iform = 4 # int32
else:
supported_formats = [np.dtype(i).name for i in cls.IFORM_DICT.values()]
msg = "The SEMPER file format does not support " "{} data type. ".format(
data.dtype.name
)
msg += "Supported data types are: " + ", ".join(supported_formats)
raise IOError(msg)
return data, iform
@classmethod
def load_from_unf(cls, filename, lazy=False):
r"""Load a `.unf`-file into a :class:`~.SemperFormat` object.
Parameters
----------
filename : string
The name of the unf-file from which to load the data. Standard
format is '\*.unf'.
Returns
-------
semper : :class:`~.SemperFormat` (N=1)
SEMPER file format object containing the loaded information.
"""
metadata = OrderedDict()
with open(filename, "rb") as f:
# Read header:
rec_length = np.fromfile(f, dtype="<i4", count=1)[0] # length of header
header = np.fromfile(f, dtype=cls.HEADER_DTYPES[: rec_length // 2], count=1)
metadata.update(sarray2dict(header))
assert (
np.frombuffer(f.read(4), dtype=np.int32)[0] == rec_length
), "Error while reading the header (length is not correct)!"
data_format = cls.IFORM_DICT[metadata["IFORM"]]
iversn, remain = divmod(metadata["IFLAG"], 10000)
ilabel, ntitle = divmod(remain, 1000)
metadata.update({"IVERSN": iversn, "ILABEL": ilabel, "NTITLE": ntitle})
# Read title:
title = ""
if ntitle > 0:
assert (
np.fromfile(f, dtype="<i4", count=1)[0] == ntitle
) # length of title
title = b"".join(np.fromfile(f, dtype="c", count=ntitle))
title = title.decode()
metadata["TITLE"] = title
assert np.fromfile(f, dtype="<i4", count=1)[0] == ntitle
if ilabel:
try:
metadata.update(cls._read_label(f))
except Exception as e:
warning = "Could not read label, trying to proceed " "without it!"
warning += " (Error message: {})".format(str(e))
warnings.warn(warning)
# Read picture data:
pos = f.tell()
shape = metadata["NLAY"], metadata["NROW"], metadata["NCOL"]
if lazy:
from dask import delayed
from dask.array import from_delayed
task = delayed(_read_data)(f, filename, pos, data_format, shape)
data = from_delayed(task, shape=shape, dtype=data_format)
else:
data = _read_data(f, filename, pos, data_format, shape)
offsets = (
metadata.get("X0V0", 0.0),
metadata.get("Y0V2", 0.0),
metadata.get("Z0V4", 0.0),
)
scales = (
metadata.get("DXV1", 1.0),
metadata.get("DYV3", 1.0),
metadata.get("DZV5", 1.0),
)
units = (
metadata.get("XUNIT", None),
metadata.get("YUNIT", None),
metadata.get("ZUNIT", None),
)
return cls(data, title, offsets, scales, units, metadata)
def save_to_unf(self, filename, skip_header=False):
"""Save a :class:`~.SemperFormat` to a file.
Parameters
----------
filename : string
The name of the unf-file to which the data should be written.
skip_header : bool, optional
Determines if the header, title and label should be skipped (useful
for some other programs). Default is False.
Returns
-------
None
"""
nlay, nrow, ncol = self.data.shape
data, iform = self._check_format(self.data)
title = self.title if self.title is not None else ""
with open(filename, "wb") as f:
if not skip_header:
# Create header:
header = np.zeros(
(1,), dtype=self.HEADER_DTYPES[:-1]
) # IFORMAT is not used!
# Fill header:
header["NCOL"] = self.data.shape[2]
header["NROW"] = self.data.shape[1]
header["NLAY"] = self.data.shape[0]
header["ICLASS"] = self.metadata.get("ICLASS", 6) # 6: Undefined!
header["IFORM"] = iform
# IVERSN: 2; ILABEL:1 (True)
header["IFLAG"] = 2 * 10000 + 1000 + len(title)
# Write header:
f.write(struct.pack("<i", 12)) # record length, 4 byte format!
f.write(header.tobytes())
f.write(struct.pack("<i", 12)) # record length, 4 byte format!
# Write title:
if len(title) > 0:
f.write(
struct.pack("<i", len(title))
) # record length, 4 byte format!
f.write(title.encode())
f.write(
struct.pack("<i", len(title))
) # record length, 4 byte format!
# Create label:
label = self._get_label()
# Write label:
f.write(struct.pack("<i", 2 * 256)) # record length, 4 byte format!
f.write(label.tobytes())
f.write(struct.pack("<i", 2 * 256)) # record length, 4 byte format!
# Write picture data:
for k in range(nlay):
for j in range(nrow):
row = self.data[k, j, :]
# Record length = bytes per entry * ncol:
record_length = np.dtype(self.IFORM_DICT[iform]).itemsize * ncol
f.write(
struct.pack("<i", record_length)
) # record length, 4 byte format!
f.write(row.tobytes())
# SEMPER always expects an even number of bytes per row,
# which is only a problem for writing single byte data
# (IFORM = 0, np.byte). If ncol is odd, an empty byte (0)
# is added:
if self.data.dtype == np.byte and ncol % 2 != 0:
np.zeros(1, dtype=np.byte).tobytes()
# record length, 4 byte format!
f.write(struct.pack("<i", record_length))
@classmethod
def from_signal(cls, signal):
"""Import a :class:`~.SemperFormat` object from a
:class:`~hyperspy.signals.Signal` object.
Parameters
----------
signal: :class:`~hyperspy.signals.Signal`
The signal which should be imported.
Returns
-------
None
"""
data = signal["data"]
smetadata = DTBox(signal["metadata"], box_dots=True)
assert len(data.shape) <= 3, "Only up to 3-dimensional datasets can be handled!"
scales, offsets, units = [1.0] * 3, [0.0] * 3, [None] * 3 # Defaults!
for i in range(len(data.shape)):
scales[i] = signal["axes"][i]["scale"]
offsets[i] = signal["axes"][i]["offset"]
units[i] = signal["axes"][i]["units"]
# Make sure data is 3D!
data = data[tuple(None for _ in range(3 - len(data.shape)))]
signal_dimension = len(
[axis for axis in signal["axes"] if not axis["navigate"]]
)
if signal_dimension == 1:
record_by = "spectrum"
elif signal_dimension == 2:
record_by = "image"
else:
record_by = ""
iclass = cls.ICLASS_DICT_INV.get(record_by, 6) # 6: undefined
data, iform = cls._check_format(data)
title = smetadata.General.to_dict().get("title", None)
metadata = OrderedDict()
if "date" in smetadata.General.keys() and "time" in smetadata.General.keys():
dt = "%s %s" % (smetadata.General.date, smetadata.General.time)
else:
dt = "%s" % datetime.now()
metadata.update(
{
"DATE": "%s" % dt.split(".")[0],
"ICLASS": iclass,
"IFORM": iform,
"IVERSN": 2, # Current standard
"ILABEL": 1, # True
"IWP": 0, # Seems standard
"IPLTYP": 248, # Seems standard
"ICCOLN": data.shape[2] // 2 + 1,
"ICROWN": data.shape[1] // 2 + 1,
"ICLAYN": data.shape[0] // 2 + 1,
}
)
return cls(data, title, offsets, scales, units, metadata)
def to_dictionary(self, lazy=False):
"""Export a :class:`~.SemperFormat` object to a
signal dictionary.
Parameters
----------
None
Returns
-------
signal: dict
The exported signal.
"""
data = self.data.squeeze() # Reduce unneeded dimensions!
axes = []
for name, scale, offset, units, size in zip(
("x", "y", "z"), self.scales, self.offsets, self.units, data.shape
):
axes.append(
{
"_type": "UniformDataAxis",
"name": name,
"units": units,
"navigate": False,
"is_binned": False,
"size": size,
"scale": scale,
"offset": offset,
}
)
metadata = {}
metadata["General"] = {}
metadata["General"]["title"] = self.title
if "DATE" in self.metadata.keys():
date, time = self._convert_date_time_from_label()
metadata["General"]["date"] = date
metadata["General"]["time"] = time
signal_dic = {
"data": data,
"metadata": metadata,
"original_metadata": self.metadata,
"axes": axes,
"attributes": {"_lazy": lazy, "ragged": False},
}
return signal_dic
def _convert_date_time_from_label(self):
# Convert the label['DATE'] to ISO 8601 for metadata
try:
dt = datetime.strptime(self.metadata["DATE"], "%Y-%m-%d %H:%M:%S")
except ValueError:
dt = datetime.strptime(self.metadata["DATE"], "%y-%m-%d %H:%M:%S")
return dt.date().isoformat(), dt.time().isoformat()
def log_info(self):
"""log important flag information of the :class:`.~SemperFormat`
object.
Parameters
----------
None
Returns
-------
None
"""
info_str = (
"Semper info:\n"
+ ("\t%s\n" % self.title)
+ ("\tdimensions: x: {}, y: {}, z: {}\n".format(*reversed(self.data.shape)))
+ ("\tscaling: x: {:.3g}, y: {:.3g}, z: {:.3g}\n".format(*self.scales))
+ ("\toffsets: x: {:.3g}, y: {:.3g}, z: {:.3g}".format(*self.offsets))
+ ("\tunits: x: {}, y: {}, z: {}".format(*self.units))
+ ("\tdata range: %s %s\n" % (self.data.min(), self.data.max()))
+ ("\tmetadata:\n")
)
for k, v in self.metadata.items():
info_str += "\t\t{}: {}".format(k, v)
_logger.info(info_str)
def unpack_from_intbytes(fmt, byte_list):
"""Read in a list of bytes (as int with range 0-255) and unpack them with
format `fmt`.
"""
return struct.unpack(fmt, b"".join(map(bytes, [[byte] for byte in byte_list])))[0]
def pack_to_intbytes(fmt, value):
"""Pack a `value` into a byte list using format `fmt` and represent it as
int (range 0-255).
"""
return [int(c) for c in struct.pack(fmt, value)]
def _read_data(fobj, fname, position, data_format, shape):
if fobj.closed:
fobj = open(fname, "rb")
fobj.seek(position)
nlay, nrow, ncol = shape
data = np.empty(shape, dtype=data_format)
for k in range(nlay):
for j in range(nrow):
rec_length = np.fromfile(fobj, dtype="<i4", count=1)[0]
# Not always ncol, see below
count = rec_length // np.dtype(data_format).itemsize
row = np.fromfile(fobj, dtype=data_format, count=count)
# [:ncol] is used because Semper always writes an even
# number of bytes which is a problem when reading in single
# bytes (IFORM = 0, np.byte). If ncol is odd, an empty
# byte (0) is added which has to be skipped during read in:
data[k, j, :] = row[:ncol]
test = np.fromfile(fobj, dtype="<i4", count=1)[0]
assert test == rec_length
return data
def file_reader(filename, lazy=False):
"""
Read a Semper ``.unf`` file.
Parameters
----------
%s
%s
%s
"""
semper = SemperFormat.load_from_unf(filename, lazy=lazy)
semper.log_info()
return [semper.to_dictionary(lazy=lazy)]
file_reader.__doc__ %= (FILENAME_DOC, LAZY_DOC, RETURNS_DOC)
def file_writer(filename, signal, skip_header=False):
"""
Write signal to a Semper ``.unf`` file.
Parameters
----------
%s
%s
skip_header : bool, default=False
Determines if the header, title and label should be skipped (useful
for some other programs).
"""
semper = SemperFormat.from_signal(signal)
semper.save_to_unf(filename, skip_header)
file_writer.__doc__ %= (FILENAME_DOC.replace("read", "write to"), SIGNAL_DOC)
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