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# -*- coding: utf-8 -*-
# Copyright 2007-2023 The HyperSpy developers
#
# This file is part of RosettaSciIO.
#
# RosettaSciIO is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# RosettaSciIO is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with RosettaSciIO. If not, see <https://www.gnu.org/licenses/#GPL>.
"""Creates Digital Micrograph scripts to generate the dm3 testing files"""
import numpy as np
dm3_data_types = {
1: "<i2", # 2 byte integer signed ("short")
2: "<f4", # 4 byte real (IEEE 754)
3: "<c8", # 8 byte complex
5: "<c8", # 8 byte complex (packed)
6: "<u1", # 1 byte integer unsigned ("byte")
7: "<i4", # 4 byte integer signed ("long")
8: np.dtype([("R", "u1"), ("G", "u1"), ("B", "u1"), ("A", "u1")]),
9: "<i1", # byte integer signed
10: "<u2", # 2 byte integer unsigned
11: "<u4", # 4 byte integer unsigned
12: "<f8", # 8 byte real
13: "<c16", # byte complex
14: "bool", # 1 byte binary (ie 0 or 1)
23: np.dtype([("R", "u1"), ("G", "u1"), ("B", "u1"), ("A", "u1")]),
}
dm4_data_types = {
1: "<i2", # 2 byte integer signed ("short")
2: "<f4", # 4 byte real (IEEE 754)
3: "<c8", # 8 byte complex
5: "<c8", # 8 byte complex (packed)
6: "<u1", # 1 byte integer unsigned ("byte")
7: "<i4", # 4 byte integer signed ("long")
8: np.dtype([("R", "u1"), ("G", "u1"), ("B", "u1"), ("A", "u1")]),
9: "<i1", # byte integer signed
10: "<u2", # 2 byte integer unsigned
11: "<u4", # 4 byte integer unsigned
12: "<f8", # 8 byte real
13: "<c16", # byte complex
14: "bool", # 1 byte binary (ie 0 or 1)
23: np.dtype([("R", "u1"), ("G", "u1"), ("B", "u1"), ("A", "u1")]),
27: "complex64", # not numpy: 8-Byte packed complex (FFT data)
28: "complex128", # not numpy: 16-Byte packed complex (FFT data)
}
def generate_1D_files(f, data_types, dmversion):
subfolder = f"dm{dmversion}_1D_data"
f.write(f'CreateDirectory(path+"{subfolder}")\n')
for key in data_types.keys():
f.write(
'filename = path+"'
f'\\\\{subfolder}\\\\test-{key}.dm{dmversion}"\n'
f'im := NewImage("test", {key}, 2)\n'
"im[0,1] = 1\n"
"im[1,2] = 2\n"
"im.SaveAsGatan(filename)\n"
)
def generate_2D_files(f, data_types, dmversion):
subfolder = f"dm{dmversion}_2D_data"
f.write(f'CreateDirectory(path+"{subfolder}")\n')
for key in data_types.keys():
f.write(
'filename = path+"'
f'\\\\{subfolder}\\\\test-{key}.dm{dmversion}"\n'
f'im := NewImage("test", {key}, 2, 2)\n'
"im[0,0,1,1] = 1\n"
"im[0,1,1,2] = 2\n"
"im[1,0,2,1] = 3\n"
"im[1,1,2,2] = 4\n"
"im.SaveAsGatan(filename)\n"
)
def generate_3D_files(f, data_types, dmversion):
subfolder = f"dm{dmversion}_3D_data"
f.write(f'CreateDirectory(path+"{subfolder}")\n')
for key in data_types.keys():
f.write(
'filename = path+"'
f'\\\\{subfolder}\\\\test-{key}.dm{dmversion}"\n'
f'im := NewImage("test", {key}, 2, 2,2)\n'
"im[0,0,0,1,1,1] = 1\n"
"im[1,0,0,2,1,1] = 2\n"
"im[0,1,0,1,2,1] = 3\n"
"im[1,1,0,2,2,1] = 4\n"
"im[0,0,1,1,1,2] = 5\n"
"im[1,0,1,2,1,2] = 6\n"
"im[0,1,1,1,2,2] = 7\n"
"im[1,1,1,2,2,2] = 8\n"
"im.SaveAsGatan(filename)\n"
)
def generate_4D_files(f, data_types, dmversion):
subfolder = f"dm{dmversion}_4D_data"
f.write(f'CreateDirectory(path+"{subfolder}")\n')
for key in data_types.keys():
f.write(
'filename = path+"'
f'\\\\{subfolder}\\\\test-{key}.dm{dmversion}"\n'
f'im := NewImage("test", %i, 2,2,2,2)\n'
"im[0,0,0,0,1,1,1,1] = 1\n"
"im[1,0,0,0,2,1,1,1] = 2\n"
"im[0,1,0,0,1,2,1,1] = 3\n"
"im[1,1,0,0,2,2,1,1] = 4\n"
"im[0,0,1,0,1,1,2,1] = 5\n"
"im[1,0,1,0,2,1,2,1] = 6\n"
"im[0,1,1,0,1,2,2,1] = 7\n"
"im[1,1,1,0,2,2,2,1] = 8\n"
"im[0,0,0,1,1,1,1,2] = 9\n"
"im[1,0,0,1,2,1,1,2] = 10\n"
"im[0,1,0,1,1,2,1,2] = 11\n"
"im[1,1,0,1,2,2,1,2] = 12\n"
"im[0,0,1,1,1,1,2,2] = 13\n"
"im[1,0,1,1,2,1,2,2] = 14\n"
"im[0,1,1,1,1,2,2,2] = 15\n"
"im[1,1,1,1,2,2,2,2] = 16\n"
"im.SaveAsGatan(filename)\n" % (dmversion, key, dmversion, key)
)
if __name__ == "__main__":
with (
open("generate_dm3_test_files.s", "w") as f1,
open("generate_dm4_test_files.s", "w") as f2,
):
for f in (f1, f2):
f.write("image im\n")
f.write("string filename, path\n")
f.write("path = GetApplicationDirectory(2, 0)\n")
f.write('result("\\nThe file will be saved to: " + path + "\\n")\n')
for f, dmv, dt in zip((f1, f2), (3, 4), (dm3_data_types, dm4_data_types)):
generate_1D_files(f, dt, dmv)
generate_2D_files(f, dt, dmv)
generate_3D_files(f, dt, dmv)
# generate_4D_files(f, dt, dmv)
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