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.. include:: global.inc
.. image:: images/logo.jpg
******************************************************
Hall of Fame: User contributed flowcharts
******************************************************
Please contribute your own work flows in your favourite colours with (an optional) short description
to email: ruffus_lib at llew.org.uk
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
RNASeq pipeline
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
http://en.wikipedia.org/wiki/RNA-Seq
Mapping transcripts onto genomes using high-throughput sequencing technologies (:download:`svg <images/gallery/gallery_rna_seq.svg>`).
.. image:: images/gallery/gallery_rna_seq.png
:target: _downloads/gallery_rna_seq.svg
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
non-coding evolutionary constraints
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
http://en.wikipedia.org/wiki/Noncoding_DNA
Non-protein coding evolutionary constraints in different species (:download:`svg <images/gallery/gallery_dless.svg>`).
.. image:: images/gallery/gallery_dless.png
:target: _downloads/gallery_dless.svg
^^^^^^^^^^^^^^^^^
SNP annotation
^^^^^^^^^^^^^^^^^
Predicting impact of different Single Nucleotide Polymorphisms
http://en.wikipedia.org/wiki/Single-nucleotide_polymorphism
Population variation across genomes (:download:`svg <images/gallery/gallery_snp_annotation.svg>`).
.. image:: images/gallery/gallery_snp_annotation.png
:target: _downloads/gallery_snp_annotation.svg
Using "pseudo" targets to run only part of the pipeline (:download:`svg <images/gallery/gallery_snp_annotation_consequences.svg>`).
.. image:: images/gallery/gallery_snp_annotation_consequences.png
:target: _downloads/gallery_snp_annotation_consequences.svg
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Chip-Seq analysis
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Analysing DNA binding sites with Chip-Seq
http://en.wikipedia.org/wiki/Chip-Sequencing
(:download:`svg <images/gallery/gallery_big_pipeline.svg>`)
.. image:: images/gallery/gallery_big_pipeline.png
:target: _downloads/gallery_big_pipeline.svg
|
