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.. include:: global.inc
.. _Installation:
************************************
Installation
************************************
:mod:`Ruffus` is a lightweight python module for building computational pipelines.
.. note ::
Ruffus requires Python 2.6 or higher or Python 3.0 or higher
==============================================================================
The easy way
==============================================================================
*Ruffus* is available as an
`easy-install <http://peak.telecommunity.com/DevCenter/EasyInstall>`_ -able package
on the `Python Package Index <http://pypi.python.org/pypi/Sphinx>`_.
::
sudo pip install ruffus --upgrade
This may also work for older installations::
easy_install -U ruffus
See below if ``eady_install`` is missing
==============================================================================
The most up-to-date code:
==============================================================================
* `Download the latest sources <https://pypi.python.org/pypi/ruffus>`_ or
* Check out the latest code from Google using git::
git clone https://bunbun68@code.google.com/p/ruffus/ .
* Bleeding edge Ruffus development takes place on github::
git clone git@github.com:bunbun/ruffus.git .
* To install after downloading, change to the , type::
python ./setup.py install
======================
Prequisites
======================
==============================================================================
Installing easy_install
==============================================================================
If your system doesn't have ``easy_install``, you can `install <ubuntu/linux mint>`__ one using a package manager, for example::
# ubuntu/linux mint
$ sudo apt-get install python-setuptools
$ or sudo yum install python-setuptools
or manually::
sudo curl http://peak.telecommunity.com/dist/ez_setup.py | python
or manually::
wget peak.telecommunity.com/dist/ez_setup.py
sudo python ez_setup.py
==============================================================================
Installing pip
==============================================================================
If Pip is missing::
$ sudo easy_install -U pip
==============================================================================
Graphical flowcharts The most up-to-date code:
==============================================================================
**Ruffus** relies on the ``dot`` programme from `Graphviz <http://www.graphviz.org/>`_
("Graph visualisation") to make pretty flowchart representations of your pipelines in multiple
graphical formats (e.g. ``png``, ``jpg``). The crossplatform Graphviz package can be
`downloaded here <http://www.graphviz.org/Download.php>`_ for Windows,
Linux, Macs and Solaris. For Fedora, try
::
yum list 'graphviz*'
For ubuntu / Debian, try
::
sudo apt-get install graphviz
|
