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#!/usr/bin/env python
from __future__ import print_function
"""
test_verbosity.py
"""
import unittest
import os
tempdir = os.path.relpath(os.path.abspath(os.path.splitext(__file__)[0])) + "/"
import sys
# add grandparent to search path for testing
grandparent_dir = os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))
sys.path.insert(0, grandparent_dir)
# module name = script name without extension
module_name = os.path.splitext(os.path.basename(__file__))[0]
# funky code to import by file name
parent_dir = os.path.abspath(os.path.join(os.path.dirname(__file__), ".."))
ruffus_name = os.path.basename(parent_dir)
ruffus = list(map(__import__, [ruffus_name]))[0]
import shutil
try:
from StringIO import StringIO
except:
from io import StringIO
import re
from ruffus import pipeline_run, pipeline_printout, suffix, transform, split, merge, dbdict, follows, mkdir, originate, Pipeline
from ruffus.ruffus_exceptions import RethrownJobError
from ruffus.ruffus_utility import RUFFUS_HISTORY_FILE, CHECKSUM_FILE_TIMESTAMPS
#---------------------------------------------------------------
# create initial files
#
@mkdir(tempdir + 'data/scratch/lg/what/one/two/three/four/five/six/seven')
@originate([ [tempdir + 'data/scratch/lg/what/one/two/three/four/five/six/seven/job1.a.start', tempdir + 'job1.b.start'],
[tempdir + 'data/scratch/lg/what/one/two/three/four/five/six/seven/job2.a.start', tempdir + 'job2.b.start'],
[tempdir + 'data/scratch/lg/what/one/two/three/four/five/six/seven/job3.a.start', tempdir + 'job3.b.start'] ])
def create_initial_file_pairs(output_files):
# create both files as necessary
for output_file in output_files:
with open(output_file, "w") as oo: pass
#---------------------------------------------------------------
# first task
@transform(create_initial_file_pairs, suffix(".start"), ".output.1")
def first_task(input_files, output_file):
with open(output_file, "w"): pass
#---------------------------------------------------------------
# second task
@transform(first_task, suffix(".output.1"), ".output.2")
def second_task(input_files, output_file):
with open(output_file, "w"): pass
test_pipeline = Pipeline("test")
test_pipeline.originate(output = [ [tempdir + 'data/scratch/lg/what/one/two/three/four/five/six/seven/job1.a.start', tempdir + 'job1.b.start'],
[tempdir + 'data/scratch/lg/what/one/two/three/four/five/six/seven/job2.a.start', tempdir + 'job2.b.start'],
[tempdir + 'data/scratch/lg/what/one/two/three/four/five/six/seven/job3.a.start', tempdir + 'job3.b.start'] ],
task_func = create_initial_file_pairs)
test_pipeline.transform(task_func = first_task, input = create_initial_file_pairs, filter = suffix(".start"), output = ".output.1")
test_pipeline.transform(input = first_task, filter = suffix(".output.1"), output = ".output.2", task_func= second_task)
decorator_syntax = 0
oop_syntax = 1
class Test_verbosity(unittest.TestCase):
#___________________________________________________________________________
#
# test_printout_abbreviated_path1
#___________________________________________________________________________
def test_printout_abbreviated_path1(self):
"""Input file exists, output doesn't exist"""
for syntax in decorator_syntax, oop_syntax:
s = StringIO()
if syntax == oop_syntax:
test_pipeline.printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 1)
else:
pipeline_printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 1, wrap_width = 500, pipeline= "main")
ret = s.getvalue()
self.assertTrue("[[.../job1.a.start, test_verbosity/job1.b.start]" in ret)
#___________________________________________________________________________
#
# test_printout_abbreviated_path2
#___________________________________________________________________________
def test_printout_abbreviated_path2(self):
"""Input file exists, output doesn't exist"""
for syntax in decorator_syntax, oop_syntax:
s = StringIO()
if syntax == oop_syntax:
test_pipeline.printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 2, wrap_width = 500)
else:
pipeline_printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 2, wrap_width = 500, pipeline= "main")
ret = s.getvalue()
self.assertTrue("[[.../seven/job1.a.start, test_verbosity/job1.b.start]" in ret)
#___________________________________________________________________________
#
# test_printout_abbreviated_path3
#___________________________________________________________________________
def test_printout_abbreviated_path3(self):
"""Input file exists, output doesn't exist"""
for syntax in decorator_syntax, oop_syntax:
s = StringIO()
if syntax == oop_syntax:
test_pipeline.printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 3, wrap_width = 500)
else:
pipeline_printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 3, wrap_width = 500, pipeline= "main")
ret = s.getvalue()
self.assertTrue("[[.../six/seven/job1.a.start, test_verbosity/job1.b.start]" in ret)
#___________________________________________________________________________
#
# test_printout_abbreviated_path9
#___________________________________________________________________________
def test_printout_abbreviated_path9(self):
"""Input file exists, output doesn't exist"""
for syntax in decorator_syntax, oop_syntax:
s = StringIO()
if syntax == oop_syntax:
test_pipeline.printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 9, wrap_width = 500)
else:
pipeline_printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 9, wrap_width = 500, pipeline= "main")
ret = s.getvalue()
self.assertTrue("[[.../what/one/two/three/four/five/six/seven/job1.a.start, test_verbosity/job1.b.start]" in ret)
#___________________________________________________________________________
#
# test_printout_abbreviated_path0
#___________________________________________________________________________
def test_printout_abbreviated_path0(self):
"""Input file exists, output doesn't exist"""
for syntax in decorator_syntax, oop_syntax:
s = StringIO()
if syntax == oop_syntax:
test_pipeline.printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 0, wrap_width = 500)
else:
pipeline_printout(s, [second_task], verbose = 5, verbose_abbreviated_path = 0, wrap_width = 500, pipeline= "main")
ret = s.getvalue()
path_str = os.path.abspath('%sdata/scratch/lg/what/one/two/three/four/five/six/seven/job2.a.start' % tempdir)
path_str = '[[%s' % path_str
#___________________________________________________________________________
#
# test_printout_abbreviated_path_minus_60
#___________________________________________________________________________
def test_printout_abbreviated_path_minus_60(self):
"""Input file exists, output doesn't exist"""
for syntax in decorator_syntax, oop_syntax:
s = StringIO()
if syntax == oop_syntax:
test_pipeline.printout(s, [second_task], verbose = 5, verbose_abbreviated_path = -60, wrap_width = 500)
else:
pipeline_printout(s, [second_task], verbose = 5, verbose_abbreviated_path = -60, wrap_width = 500, pipeline= "main")
ret = s.getvalue()
self.assertTrue('[<???> ve/six/seven/job1.a.start, test_verbosity/job1.b.start]' in ret)
#
# Necessary to protect the "entry point" of the program under windows.
# see: http://docs.python.org/library/multiprocessing.html#multiprocessing-programming
#
if __name__ == '__main__':
unittest.main()
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