1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
|
{% extends "!layout.html" %}
{% block sidebarsearch %}
{{ super() }}
<h3> Quick Reference:</h3>
<ul>
<h4><a href="{{ pathto('decorators/decorators') }}#core">Core:</a></h4>
<ul>
<li><a href="{{ pathto('decorators/originate') }}">@originate</a> </li>
<li><a href="{{ pathto('decorators/split') }}">@split</a> </li>
<li><a href="{{ pathto('decorators/transform') }}">@transform</a> </li>
<li><a href="{{ pathto('decorators/merge') }}">@merge</a> </li>
</ul>
<h4><a href="{{ pathto('decorators/decorators') }}#advanced">Advanced</a></h4>
<ul>
<li><a href="{{ pathto('decorators/subdivide') }}">@subdivide</a> </li>
<li><a href="{{ pathto('decorators/transform_ex') }}">@transform (add_inputs) </a> </li>
<li><a href="{{ pathto('decorators/collate') }}">@collate</a> </li>
<li><a href="{{ pathto('decorators/collate_ex') }}">@collate (add_inputs)</a> </li>
<li><a href="{{ pathto('decorators/graphviz') }}">@graphviz</a> </li>
<li><a href="{{ pathto('decorators/mkdir') }}">@mkdir</a> </li>
<li><a href="{{ pathto('decorators/follows') }}">@follows / mkdir</a> </li>
<li><a href="{{ pathto('decorators/posttask') }}">@posttask touch_file</a> </li>
<li><a href="{{ pathto('decorators/active_if') }}">@active_if</a> </li>
<li><a href="{{ pathto('decorators/jobs_limit') }}">@jobs_limit</a> </li>
</ul>
<h4><a href="{{ pathto('decorators/decorators') }}#combinatorics">Combinatorial:</a></h4>
<ul>
<li><a href="{{ pathto('decorators/product') }}">@product </a> </li>
<li><a href="{{ pathto('decorators/permutations') }}">@permutations </a> </li>
<li><a href="{{ pathto('decorators/combinations') }}">@combinations </a> </li>
<li><a href="{{ pathto('decorators/combinations_with_replacement') }}">@combinations_ _with_replacement </a> </li>
</ul>
<h4><a href="{{ pathto('decorators/decorators') }}#esoteric">Esoteric</a></h4>
<ul>
<li><a href="{{ pathto('decorators/files_ex') }}">@files (on the fly)</a> </li>
<li><a href="{{ pathto('decorators/parallel') }}">@parallel</a> </li>
<li><a href="{{ pathto('decorators/check_if_uptodate') }}">@check_if_uptodate</a> </li>
</ul>
<h4 ><a href="{{ pathto('decorators/indicator_objects') }}">Indicator objects</a></h4>
<h4 >Pipeline functions</h4>
<ul>
<li><a href="{{ pathto('pipeline_functions') }}#pipeline-functions-pipeline-run">pipeline_run</a> </li>
<li><a href="{{ pathto('pipeline_functions') }}#pipeline-functions-pipeline-printout">pipeline_printout</a> </li>
<li><a href="{{ pathto('pipeline_functions') }}#pipeline-functions-pipeline-printout-graph">pipeline_printout_graph</a> </li>
<li><a href="{{ pathto('pipeline_functions') }}#pipeline-functions-pipeline-get-task-names">pipeline_get_task_names</a> </li>
<li><a href="{{ pathto('drmaa_wrapper_functions') }}#drmaa-wrapper-functions-drmaa_wrapper-run_job">drmaa_wrapper.run_job</a> </li>
</ul>
<a href="{{ pathto('todo') }}">Future plans</a>
</ul>
{% endblock %}
{% block rootrellink %}
Ruffus v. {{ release }}
<li><a href="{{ pathto('index') }}">Home</a> | </li>
<li><a href="{{ pathto('contents') }}">Contents</a> | </li>
<li><a href="{{ pathto('installation') }}">Install</a> | </li>
<li><a href="{{ pathto('tutorials/new_tutorial/introduction') }}">Manual</a> / </li>
<li><a href="{{ pathto('tutorials/new_tutorial/manual_contents') }}">(TOC)</a> | </li>
<li><a href="{{ pathto('faq') }}">FAQ</a> | </li>
<li><a href="{{ pathto('cheatsheet') }}">Cheat sheet</a> | </li>
<li><a href="{{ pathto('tutorials/new_tutorial/command_line') }}">Command Line</a> | </li>
<li><a href="{{ pathto('gallery') }}">Gallery</a> | </li>
<li><a href="{{ pathto('tutorials/new_syntax') }}">New syntax in v 2.6</a> | </li>
<li><a href="{{ pathto('history') }}">Latest Changes</a> » </li>
{% endblock %}
|
