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.. include:: global.inc
.. _Installation:
************************************
Installation
************************************
:mod:`Ruffus` is a lightweight python module for building computational pipelines.
.. note ::
Ruffus requires Python 3.0 or higher, python 2 is no longer supported but older versions will still be python 2 compatible.
==============================================================================
conda installation
==============================================================================
The recomended method for installing CGAT-ruffus is to install using `conda <https://conda.io/en/latest/>`_ through
the `bioconda <https://anaconda.org/bioconda/ruffus>`_ channel. The reson for conda being the prefferred method
is that the dependancied are taken care of.
::
conda install -c bioconda ruffus
==============================================================================
pip installation
==============================================================================
*Ruffus* is also available on `pypi <https://pypi.org/project/ruffus/>`_.
::
pip install ruffus
==============================================================================
Manual installation
==============================================================================
To obtain the latest code, check it out from `github <https://github.com/cgat-developers/ruffus>`_ and activate it.
::
git clone https://github.com/cgat-developers/ruffus.git
cd ruffus
python setup.py install
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