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|
From: Ananthu C V <weepingclown@debian.org>
Date: Sun, 8 Mar 2026 11:17:36 +0100
Subject: use raw strings to avoid syntax warnings
Last-Update: 2024-12-05
---
doc/conf.py | 2 +-
ruffus/cmdline.py | 6 ++---
ruffus/combinatorics.py | 2 +-
ruffus/parse_old_style_ruffus.py | 6 ++---
ruffus/proxy_logger.py | 4 ++--
ruffus/ruffus_utility.py | 2 +-
ruffus/test/test_combinatorics.py | 28 +++++++++++------------
ruffus/test/test_file_name_parameters.py | 14 ++++++------
ruffus/test/test_newstyle_combinatorics.py | 28 +++++++++++------------
ruffus/test/test_newstyle_regex_error_messages.py | 20 ++++++++--------
ruffus/test/test_regex_error_messages.py | 20 ++++++++--------
ruffus/test/test_ruffus_utility.py | 2 +-
12 files changed, 67 insertions(+), 67 deletions(-)
diff --git a/doc/conf.py b/doc/conf.py
index 0b9cea2..37bf632 100644
--- a/doc/conf.py
+++ b/doc/conf.py
@@ -65,7 +65,7 @@ copyright = u'2009-2019 cgat-developers'
version=ruffus.ruffus_version.__version #major.minor[.patch[.sub]]
# The full version, without betaincluding alpha/beta/rc tags.
import re
-release = re.subn("([\d\.]+).*", r"\1", version)[0]
+release = re.subn(r"([\d\.]+).*", r"\1", version)[0]
print(version, release)
diff --git a/ruffus/cmdline.py b/ruffus/cmdline.py
index 46d39bc..6928035 100644
--- a/ruffus/cmdline.py
+++ b/ruffus/cmdline.py
@@ -665,7 +665,7 @@ def get_extra_options_appropriate_for_command(appropriate_option_names, extra_op
# _________________________________________________________________________________________
def handle_verbose(options):
- """
+ r"""
raw options.verbose is a list of specifiers
'+' : i.e. --verbose. This just increases the current verbosity value by 1
'\d+' : e.g. --verbose 6. This (re)sets the verbosity value
@@ -704,8 +704,8 @@ def handle_verbose(options):
#
# Each verbosity specifier can be
# '+' : i.e. --verbose. This just increases the current verbosity value by 1
- # '\d+' : e.g. --verbose 6. This (re)sets the verbosity value
- # '\d+:\d+' : e.g. --verbose 7:-5 The second number is the verbose_abbreviated_path
+ # r'\d+' : e.g. --verbose 6. This (re)sets the verbosity value
+ # r'\d+:\d+' : e.g. --verbose 7:-5 The second number is the verbose_abbreviated_path
#
for vv in options.verbose:
mm = match_regex.match(vv)
diff --git a/ruffus/combinatorics.py b/ruffus/combinatorics.py
index 2aeed35..b2f2826 100644
--- a/ruffus/combinatorics.py
+++ b/ruffus/combinatorics.py
@@ -23,7 +23,7 @@
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#################################################################################
-"""
+r"""
********************************************
:mod:`ruffus.combinatorics` -- Overview
diff --git a/ruffus/parse_old_style_ruffus.py b/ruffus/parse_old_style_ruffus.py
index 8559c72..6ad84b8 100755
--- a/ruffus/parse_old_style_ruffus.py
+++ b/ruffus/parse_old_style_ruffus.py
@@ -175,7 +175,7 @@ if __name__ == '__main__':
# 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
-func_re = re.compile("^\s*def.*\(")
+func_re = re.compile(r"^\s*def.*\(")
def get_decorators(line_num, decorated_lines, all_lines):
@@ -192,8 +192,8 @@ def get_decorators(line_num, decorated_lines, all_lines):
raise Exception("Unterminated decorators %s" % (decorated_lines,))
-decorator_re = re.compile("^\s*@")
-no_white_space_re = re.compile("^[^#\s]")
+decorator_re = re.compile(r"^\s*@")
+no_white_space_re = re.compile(r"^[^#\s]")
if __name__ == '__main__':
line_num = 1
last_decorated_line_num = 1
diff --git a/ruffus/proxy_logger.py b/ruffus/proxy_logger.py
index 539ed9f..0b4830a 100644
--- a/ruffus/proxy_logger.py
+++ b/ruffus/proxy_logger.py
@@ -23,7 +23,7 @@
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#################################################################################
-"""
+r"""
****************************************************************************
Create proxy for logging for use with multiprocessing
****************************************************************************
@@ -320,7 +320,7 @@ class LoggingManager(multiprocessing.managers.SyncManager):
def make_shared_logger_and_proxy(logger_factory, logger_name, args):
- """
+ r"""
Make a `logging <http://docs.python.org/library/logging.html>`_ object
called "\ ``logger_name``\ " by calling ``logger_factory``\ (``args``\ )
diff --git a/ruffus/ruffus_utility.py b/ruffus/ruffus_utility.py
index 168c196..30c8af9 100644
--- a/ruffus/ruffus_utility.py
+++ b/ruffus/ruffus_utility.py
@@ -499,7 +499,7 @@ def regex_matches_as_dict(test_str, compiled_regex):
#
# _________________________________________________________________________________________
def path_decomposition_regex_match(test_str, compiled_regex):
- """
+ r"""
Returns a dictionary identifying the components of a file path.
This includes both the components of a path:
diff --git a/ruffus/test/test_combinatorics.py b/ruffus/test/test_combinatorics.py
index 6b3e198..ef3245c 100755
--- a/ruffus/test/test_combinatorics.py
+++ b/ruffus/test/test_combinatorics.py
@@ -385,10 +385,10 @@ class TestCombinatorics(unittest.TestCase):
pipeline_printout(s, [check_product_merged_task],
verbose=5, wrap_width=10000, pipeline="main")
self.assertTrue(re.search('Job needs update:.*Missing files.*'
- '\[.*{tempdir}/a_name.tmp1, '
+ r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/e_name.tmp1, '
'.*{tempdir}/h_name.tmp1, '
- '.*{tempdir}/a_name.e_name.h_name.tmp2\]'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
+ r'.*{tempdir}/a_name.e_name.h_name.tmp2\]'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
def test_product_run(self):
"""Run product"""
@@ -460,9 +460,9 @@ class TestCombinatorics(unittest.TestCase):
pipeline_printout(s, [check_combinations2_merged_task],
verbose=5, wrap_width=10000, pipeline="main")
self.assertTrue(re.search('Job needs update:.*Missing files.*'
- '\[.*{tempdir}/a_name.tmp1, '
+ r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
- '.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
+ r'.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
def test_combinations2_run(self):
"""Run product"""
@@ -486,10 +486,10 @@ class TestCombinatorics(unittest.TestCase):
pipeline_printout(s, [check_combinations3_merged_task],
verbose=5, wrap_width=10000, pipeline="main")
self.assertTrue(re.search(
- '\[.*{tempdir}/a_name.tmp1, '
+ r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
'.*{tempdir}/c_name.tmp1, '
- '.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_combinations3_run(self):
"""Run product"""
@@ -513,9 +513,9 @@ class TestCombinatorics(unittest.TestCase):
s = StringIO()
pipeline_printout(s, [check_permutations2_merged_task],
verbose=5, wrap_width=10000, pipeline="main")
- self.assertTrue(re.search('\[.*{tempdir}/a_name.tmp1, '
+ self.assertTrue(re.search(r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
- '.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_permutations2_run(self):
"""Run product"""
@@ -538,10 +538,10 @@ class TestCombinatorics(unittest.TestCase):
s = StringIO()
pipeline_printout(s, [check_permutations3_merged_task],
verbose=5, wrap_width=10000, pipeline="main")
- self.assertTrue(re.search('\[.*{tempdir}/a_name.tmp1, '
+ self.assertTrue(re.search(r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
'.*{tempdir}/c_name.tmp1, '
- '.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_permutations3_run(self):
"""Run product"""
@@ -565,9 +565,9 @@ class TestCombinatorics(unittest.TestCase):
s = StringIO()
pipeline_printout(s, [check_combinations_with_replacement2_merged_task],
verbose=5, wrap_width=10000, pipeline="main")
- self.assertTrue(re.search('\[.*{tempdir}/a_name.tmp1, '
+ self.assertTrue(re.search(r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
- '.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_combinations_with_replacement2_run(self):
"""Run product"""
@@ -590,10 +590,10 @@ class TestCombinatorics(unittest.TestCase):
s = StringIO()
pipeline_printout(s, [check_combinations_with_replacement3_merged_task],
verbose=5, wrap_width=10000, pipeline="main")
- self.assertTrue(re.search('\[.*{tempdir}/a_name.tmp1, '
+ self.assertTrue(re.search(r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
'.*{tempdir}/c_name.tmp1, '
- '.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_combinations_with_replacement3_run(self):
"""Run product"""
diff --git a/ruffus/test/test_file_name_parameters.py b/ruffus/test/test_file_name_parameters.py
index e805a6a..22cf06a 100755
--- a/ruffus/test/test_file_name_parameters.py
+++ b/ruffus/test/test_file_name_parameters.py
@@ -797,7 +797,7 @@ class Test_transform_param_factory(unittest.TestCase):
# simple 1 input, 1 output
#
unnamed_args = [tempdir + "/*.test",
- task.formatter("/(?P<name>\w+).test$"),
+ task.formatter(r"/(?P<name>\w+).test$"),
["{path[0]}/{name[0]}.output1{ext[0]}", "{path[0]}/{name[0]}.output2"], "{path[0]}/{name[0]}.output3"]
expected_results = [
('DIR/f0.test', ['DIR/f0.output1.test',
@@ -1589,9 +1589,9 @@ class Test_product_param_factory(unittest.TestCase):
# simple 1 input, 1 output
#
args = [[tempdir + "/a.test1", tempdir + "/b.test1"],
- task.formatter("(?:.+/)?(?P<ID>\w+)\.(.+)"),
+ task.formatter(r"(?:.+/)?(?P<ID>\w+)\.(.+)"),
[tempdir + "/c.test2", tempdir + "/d.test2", tempdir + "/e.ignore"],
- task.formatter("(?:.+/)?(?P<ID>\w+)\.(test2)"),
+ task.formatter(r"(?:.+/)?(?P<ID>\w+)\.(test2)"),
r"{path[0][0]}/{ID[0][0]}.{1[1][0]}.output"]
expected_result = [
(('DIR/a.test1', 'DIR/c.test2'), 'DIR/a.c.output'),
@@ -1630,9 +1630,9 @@ class Test_product_param_factory(unittest.TestCase):
# (replace) inputs
#
#
- paths = self.do_task_product([tempdir + "/a.test1", tempdir + "/b.test1"], task.formatter("(?:.+/)?(?P<ID>\w+)\.(.+)"),
+ paths = self.do_task_product([tempdir + "/a.test1", tempdir + "/b.test1"], task.formatter(r"(?:.+/)?(?P<ID>\w+)\.(.+)"),
[tempdir + "/c.test2", tempdir + "/d.test2", tempdir +
- "/e.ignore"], task.formatter("(?:.+/)?(?P<ID>\w+)\.(test2)"),
+ "/e.ignore"], task.formatter(r"(?:.+/)?(?P<ID>\w+)\.(test2)"),
task.inputs(
("{path[0][0]}/{basename[0][0]}.testwhat1", "{path[1][0]}/{basename[1][0]}.testwhat2")),
r"{path[0][0]}/{ID[0][0]}.{1[1][0]}.output")
@@ -1649,9 +1649,9 @@ class Test_product_param_factory(unittest.TestCase):
# add inputs
#
#
- paths = self.do_task_product([tempdir + "/a.test1", tempdir + "/b.test1"], task.formatter("(?:.+/)?(?P<ID>\w+)\.(.+)"),
+ paths = self.do_task_product([tempdir + "/a.test1", tempdir + "/b.test1"], task.formatter(r"(?:.+/)?(?P<ID>\w+)\.(.+)"),
[tempdir + "/c.test2", tempdir + "/d.test2", tempdir +
- "/e.ignore"], task.formatter("(?:.+/)?(?P<ID>\w+)\.(test2)"),
+ "/e.ignore"], task.formatter(r"(?:.+/)?(?P<ID>\w+)\.(test2)"),
add_inputs(
"{path[0][0]}/{basename[0][0]}.testwhat1", "{path[1][0]}/{basename[1][0]}.testwhat2", ),
r"{path[0][0]}/{ID[0][0]}.{1[1][0]}.output")
diff --git a/ruffus/test/test_newstyle_combinatorics.py b/ruffus/test/test_newstyle_combinatorics.py
index 35af678..713e92a 100755
--- a/ruffus/test/test_newstyle_combinatorics.py
+++ b/ruffus/test/test_newstyle_combinatorics.py
@@ -397,10 +397,10 @@ class TestCombinatorics(unittest.TestCase):
test_pipeline2.printout(
s, [check_product_merged_task], verbose=5, wrap_width=10000)
self.assertTrue(re.search('Job needs update:.*Missing files.*'
- '\[.*{tempdir}/a_name.tmp1, '
+ r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/e_name.tmp1, '
'.*{tempdir}/h_name.tmp1, '
- '.*{tempdir}/a_name.e_name.h_name.tmp2\]'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
+ r'.*{tempdir}/a_name.e_name.h_name.tmp2\]'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
def test_product_run(self):
"""Run product"""
@@ -471,9 +471,9 @@ class TestCombinatorics(unittest.TestCase):
test_pipeline1.printout(
s, [check_combinations2_merged_task], verbose=5, wrap_width=10000)
self.assertTrue(re.search('Job needs update:.*Missing files.*'
- '\[.*{tempdir}/a_name.tmp1, '
+ r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
- '.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
+ r'.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
def test_combinations2_run(self):
"""Run product"""
@@ -497,10 +497,10 @@ class TestCombinatorics(unittest.TestCase):
test_pipeline2.printout(
s, [check_combinations3_merged_task], verbose=5, wrap_width=10000)
self.assertTrue(re.search(
- '\[.*{tempdir}/a_name.tmp1, '
+ r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
'.*{tempdir}/c_name.tmp1, '
- '.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_combinations3_run(self):
"""Run product"""
@@ -524,9 +524,9 @@ class TestCombinatorics(unittest.TestCase):
s = StringIO()
test_pipeline2.printout(
s, [check_permutations2_merged_task], verbose=5, wrap_width=10000)
- self.assertTrue(re.search('\[.*{tempdir}/a_name.tmp1, '
+ self.assertTrue(re.search(r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
- '.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_permutations2_run(self):
"""Run product"""
@@ -549,10 +549,10 @@ class TestCombinatorics(unittest.TestCase):
s = StringIO()
test_pipeline2.printout(
s, [check_permutations3_merged_task], verbose=5, wrap_width=10000)
- self.assertTrue(re.search('\[.*{tempdir}/a_name.tmp1, '
+ self.assertTrue(re.search(r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
'.*{tempdir}/c_name.tmp1, '
- '.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_permutations3_run(self):
"""Run product"""
@@ -576,9 +576,9 @@ class TestCombinatorics(unittest.TestCase):
s = StringIO()
test_pipeline2.printout(
s, [check_combinations_with_replacement2_merged_task], verbose=5, wrap_width=10000)
- self.assertTrue(re.search('\[.*{tempdir}/a_name.tmp1, '
+ self.assertTrue(re.search(r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
- '.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_combinations_with_replacement2_run(self):
"""Run product"""
@@ -601,10 +601,10 @@ class TestCombinatorics(unittest.TestCase):
s = StringIO()
test_pipeline2.printout(
s, [check_combinations_with_replacement3_merged_task], verbose=5, wrap_width=10000)
- self.assertTrue(re.search('\[.*{tempdir}/a_name.tmp1, '
+ self.assertTrue(re.search(r'\[.*{tempdir}/a_name.tmp1, '
'.*{tempdir}/b_name.tmp1, '
'.*{tempdir}/c_name.tmp1, '
- '.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
+ r'.*{tempdir}/a_name.b_name.c_name.tmp2\]'.format(tempdir=tempdir), s.getvalue()))
def test_combinations_with_replacement3_run(self):
"""Run product"""
diff --git a/ruffus/test/test_newstyle_regex_error_messages.py b/ruffus/test/test_newstyle_regex_error_messages.py
index a10cfa7..b1e7446 100755
--- a/ruffus/test/test_newstyle_regex_error_messages.py
+++ b/ruffus/test/test_newstyle_regex_error_messages.py
@@ -307,7 +307,7 @@ class Test_regex_error_messages(unittest.TestCase):
test_pipeline.printout(s, [check_regex_task],
verbose=5, wrap_width=10000)
self.assertTrue(re.search(
- 'Missing files.*\[{tempdir}/a_name.tmp1, {tempdir}/a_name.tmp2'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
+ r'Missing files.*\[{tempdir}/a_name.tmp1, {tempdir}/a_name.tmp2'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
def test_regex_run(self):
"""Run transform(...,regex()...)"""
@@ -349,7 +349,7 @@ class Test_regex_error_messages(unittest.TestCase):
test_pipeline.printout(
s, [check_suffix_task], verbose=5, wrap_width=10000)
self.assertTrue(re.search(
- 'Missing files.*\[{tempdir}/a_name.tmp1, {tempdir}/a_name.tmp2'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
+ r'Missing files.*\[{tempdir}/a_name.tmp1, {tempdir}/a_name.tmp2'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
def test_suffix_run(self):
"""Run transform(...,suffix()...)"""
@@ -367,12 +367,12 @@ class Test_regex_error_messages(unittest.TestCase):
cleanup_tmpdir()
s = StringIO()
self.assertRaisesRegex(fatal_error_input_file_does_not_match,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
pipeline_printout,
s, [check_suffix_unmatched_task],
verbose=3)
self.assertRaisesRegex(RethrownJobError,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
test_pipeline.run,
[check_suffix_unmatched_task], verbose=0, multiprocess=parallelism)
@@ -406,12 +406,12 @@ class Test_regex_error_messages(unittest.TestCase):
cleanup_tmpdir()
s = StringIO()
self.assertRaisesRegex(fatal_error_input_file_does_not_match,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
test_pipeline.printout,
s, [check_regex_misspelt_capture_error_task],
verbose=3)
self.assertRaisesRegex(RethrownJobError,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
test_pipeline.run,
[check_regex_misspelt_capture_error_task], verbose=0)
@@ -423,12 +423,12 @@ class Test_regex_error_messages(unittest.TestCase):
cleanup_tmpdir()
s = StringIO()
self.assertRaisesRegex(fatal_error_input_file_does_not_match,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
test_pipeline.printout,
s, [check_regex_misspelt_capture2_error_task],
verbose=3)
self.assertRaisesRegex(RethrownJobError,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
test_pipeline.run,
[check_regex_misspelt_capture2_error_task], verbose=0, multiprocess=parallelism)
@@ -441,12 +441,12 @@ class Test_regex_error_messages(unittest.TestCase):
cleanup_tmpdir()
s = StringIO()
self.assertRaisesRegex(fatal_error_input_file_does_not_match,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
test_pipeline.printout,
s, [check_regex_out_of_range_regex_reference_error_task],
verbose=3)
self.assertRaisesRegex(RethrownJobError,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
test_pipeline.run,
[check_regex_out_of_range_regex_reference_error_task], verbose=0, multiprocess=parallelism)
diff --git a/ruffus/test/test_regex_error_messages.py b/ruffus/test/test_regex_error_messages.py
index b744aae..012e896 100755
--- a/ruffus/test/test_regex_error_messages.py
+++ b/ruffus/test/test_regex_error_messages.py
@@ -299,7 +299,7 @@ class Test_regex_error_messages(unittest.TestCase):
pipeline_printout(s, [check_regex_task], verbose=5,
wrap_width=10000, pipeline="main")
self.assertTrue(re.search(
- 'Missing files.*\[{tempdir}a_name.tmp1, {tempdir}a_name.tmp2'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
+ r'Missing files.*\[{tempdir}a_name.tmp1, {tempdir}a_name.tmp2'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
def test_regex_run(self):
"""Run transform(...,regex()...)"""
@@ -341,7 +341,7 @@ class Test_regex_error_messages(unittest.TestCase):
pipeline_printout(s, [check_suffix_task], verbose=5,
wrap_width=10000, pipeline="main")
self.assertTrue(re.search(
- 'Missing files.*\[{tempdir}a_name.tmp1, {tempdir}a_name.tmp2'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
+ r'Missing files.*\[{tempdir}a_name.tmp1, {tempdir}a_name.tmp2'.format(tempdir=tempdir), s.getvalue(), re.DOTALL))
def test_suffix_run(self):
"""Run transform(...,suffix()...)"""
@@ -359,12 +359,12 @@ class Test_regex_error_messages(unittest.TestCase):
cleanup_tmpdir()
s = StringIO()
self.assertRaisesRegex(fatal_error_input_file_does_not_match,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
pipeline_printout,
s, [check_suffix_unmatched_task],
verbose=3)
self.assertRaisesRegex(RethrownJobError,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
pipeline_run,
[check_suffix_unmatched_task], verbose=0, multiprocess=parallelism)
@@ -398,12 +398,12 @@ class Test_regex_error_messages(unittest.TestCase):
cleanup_tmpdir()
s = StringIO()
self.assertRaisesRegex(fatal_error_input_file_does_not_match,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
pipeline_printout,
s, [check_regex_misspelt_capture_error_task],
verbose=3)
self.assertRaisesRegex(RethrownJobError,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
pipeline_run,
[check_regex_misspelt_capture_error_task], verbose=0)
@@ -415,12 +415,12 @@ class Test_regex_error_messages(unittest.TestCase):
cleanup_tmpdir()
s = StringIO()
self.assertRaisesRegex(fatal_error_input_file_does_not_match,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
pipeline_printout,
s, [check_regex_misspelt_capture2_error_task],
verbose=3)
self.assertRaisesRegex(RethrownJobError,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*unknown group name",
pipeline_run,
[check_regex_misspelt_capture2_error_task], verbose=0, multiprocess=parallelism)
@@ -433,12 +433,12 @@ class Test_regex_error_messages(unittest.TestCase):
cleanup_tmpdir()
s = StringIO()
self.assertRaisesRegex(fatal_error_input_file_does_not_match,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
pipeline_printout,
s, [check_regex_out_of_range_regex_reference_error_task],
verbose=3)
self.assertRaisesRegex(RethrownJobError,
- "File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
+ r"File '.*?' does not match regex\('.*?'\) and pattern '.*?':\n.*invalid group reference",
pipeline_run,
[check_regex_out_of_range_regex_reference_error_task], verbose=0, multiprocess=parallelism)
diff --git a/ruffus/test/test_ruffus_utility.py b/ruffus/test/test_ruffus_utility.py
index 1f640cd..61269b1 100755
--- a/ruffus/test/test_ruffus_utility.py
+++ b/ruffus/test/test_ruffus_utility.py
@@ -508,7 +508,7 @@ class Test_expand_nested_tasks_or_globs(unittest.TestCase):
class Test_regex_replace (unittest.TestCase):
def helper(self, data, result):
- regex_str = "([a-z]+)\.([a-z]+)\.([a-z]+)\.([a-z]+)"
+ regex_str = r"([a-z]+)\.([a-z]+)\.([a-z]+)\.([a-z]+)"
try_result = regex_replace("aaa.bbb.ccc.aaa",
regex_str,
re.compile(regex_str),
|
