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#! /usr/bin/env python
from __future__ import print_function
from ruffus.ruffus_utility import RUFFUS_HISTORY_FILE, CHECKSUM_FILE_TIMESTAMPS, get_default_history_file_name
from ruffus.drmaa_wrapper import run_job
from ruffus.ruffus_exceptions import RethrownJobError
import ruffus
import unittest
import os
import sys
import shutil
try:
from StringIO import StringIO
except:
from io import StringIO
import time
import re
import subprocess
exe_path = os.path.split(os.path.abspath(sys.argv[0]))[0]
sys.path.insert(0, os.path.abspath(os.path.join(exe_path, "..", "..")))
# from ruffus.combinatorics import *
workdir = 'tmp_test_job_history_with_exceptions'
# sub-1s resolution in system?
one_second_per_job = None
throw_exception = False
@ruffus.mkdir(workdir)
@ruffus.originate([workdir + "/" + prefix + "_name.tmp1" for prefix in "abcdefghijk"])
def generate_initial_files1(on):
with open(on, 'w') as outfile:
pass
@ruffus.transform(generate_initial_files1,
ruffus.suffix(".tmp1"), ".tmp2")
def test_task2(infile, outfile):
print("%s start to run " % infile)
run_job("./five_second.py", run_locally=True)
print("%s wake up " % infile)
with open(outfile, "w") as p:
pass
@ruffus.transform(test_task2, ruffus.suffix(".tmp2"), ".tmp3")
def test_task3(infile, outfile):
print("%s start to run " % infile)
# subprocess.check_call("./five_second.py")
run_job("./five_second.py", run_locally=True)
print("%s wake up " % infile)
with open(outfile, "w") as p:
pass
def cleanup_tmpdir():
os.system('rm -f %s %s' %
(os.path.join(workdir, '*'), RUFFUS_HISTORY_FILE))
def do_main():
print("Press Ctrl-C Now!!", file=sys.stdout)
sys.stdout.flush()
time.sleep(2)
print("Start....", file=sys.stdout)
sys.stdout.flush()
ruffus.pipeline_run(verbose=11,
multiprocess=5, pipeline="main")
print("too late!!", file=sys.stdout)
sys.stdout.flush()
cleanup_tmpdir()
do_main()
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