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#!/usr/bin/env python
from __future__ import division, print_function, absolute_import
import datetime
import os
import sys
from os.path import join as pjoin
if sys.version_info[0] >= 3:
from io import StringIO
else:
from cStringIO import StringIO
import numpy as np
from numpy.testing import (TestCase, assert_array_almost_equal,
assert_array_equal, assert_equal, assert_,
assert_raises, dec, run_module_suite)
from scipy.io.arff.arffread import loadarff
from scipy.io.arff.arffread import read_header, parse_type, ParseArffError
data_path = pjoin(os.path.dirname(__file__), 'data')
test1 = os.path.join(data_path, 'test1.arff')
test2 = os.path.join(data_path, 'test2.arff')
test3 = os.path.join(data_path, 'test3.arff')
test4 = pjoin(data_path, 'test4.arff')
test5 = pjoin(data_path, 'test5.arff')
test6 = pjoin(data_path, 'test6.arff')
test7 = pjoin(data_path, 'test7.arff')
test8 = pjoin(data_path, 'test8.arff')
expect4_data = [(0.1, 0.2, 0.3, 0.4, 'class1'),
(-0.1, -0.2, -0.3, -0.4, 'class2'),
(1, 2, 3, 4, 'class3')]
expected_types = ['numeric', 'numeric', 'numeric', 'numeric', 'nominal']
missing = pjoin(data_path, 'missing.arff')
expect_missing_raw = np.array([[1, 5], [2, 4], [np.nan, np.nan]])
expect_missing = np.empty(3, [('yop', float), ('yap', float)])
expect_missing['yop'] = expect_missing_raw[:, 0]
expect_missing['yap'] = expect_missing_raw[:, 1]
class DataTest(TestCase):
def test1(self):
# Parsing trivial file with nothing.
self._test(test4)
def test2(self):
# Parsing trivial file with some comments in the data section.
self._test(test5)
def test3(self):
# Parsing trivial file with nominal attribute of 1 character.
self._test(test6)
def _test(self, test_file):
data, meta = loadarff(test_file)
for i in range(len(data)):
for j in range(4):
assert_array_almost_equal(expect4_data[i][j], data[i][j])
assert_equal(meta.types(), expected_types)
def test_filelike(self):
# Test reading from file-like object (StringIO)
f1 = open(test1)
data1, meta1 = loadarff(f1)
f1.close()
f2 = open(test1)
data2, meta2 = loadarff(StringIO(f2.read()))
f2.close()
assert_(data1 == data2)
assert_(repr(meta1) == repr(meta2))
class MissingDataTest(TestCase):
def test_missing(self):
data, meta = loadarff(missing)
for i in ['yop', 'yap']:
assert_array_almost_equal(data[i], expect_missing[i])
class NoDataTest(TestCase):
def test_nodata(self):
# The file nodata.arff has no data in the @DATA section.
# Reading it should result in an array with length 0.
nodata_filename = os.path.join(data_path, 'nodata.arff')
data, meta = loadarff(nodata_filename)
expected_dtype = np.dtype([('sepallength', '<f8'),
('sepalwidth', '<f8'),
('petallength', '<f8'),
('petalwidth', '<f8'),
('class', 'S15')])
assert_equal(data.dtype, expected_dtype)
assert_equal(data.size, 0)
class HeaderTest(TestCase):
def test_type_parsing(self):
# Test parsing type of attribute from their value.
ofile = open(test2)
rel, attrs = read_header(ofile)
ofile.close()
expected = ['numeric', 'numeric', 'numeric', 'numeric', 'numeric',
'numeric', 'string', 'string', 'nominal', 'nominal']
for i in range(len(attrs)):
assert_(parse_type(attrs[i][1]) == expected[i])
def test_badtype_parsing(self):
# Test parsing wrong type of attribute from their value.
ofile = open(test3)
rel, attrs = read_header(ofile)
ofile.close()
for name, value in attrs:
assert_raises(ParseArffError, parse_type, value)
def test_fullheader1(self):
# Parsing trivial header with nothing.
ofile = open(test1)
rel, attrs = read_header(ofile)
ofile.close()
# Test relation
assert_(rel == 'test1')
# Test numerical attributes
assert_(len(attrs) == 5)
for i in range(4):
assert_(attrs[i][0] == 'attr%d' % i)
assert_(attrs[i][1] == 'REAL')
# Test nominal attribute
assert_(attrs[4][0] == 'class')
assert_(attrs[4][1] == '{class0, class1, class2, class3}')
def test_dateheader(self):
ofile = open(test7)
rel, attrs = read_header(ofile)
ofile.close()
assert_(rel == 'test7')
assert_(len(attrs) == 5)
assert_(attrs[0][0] == 'attr_year')
assert_(attrs[0][1] == 'DATE yyyy')
assert_(attrs[1][0] == 'attr_month')
assert_(attrs[1][1] == 'DATE yyyy-MM')
assert_(attrs[2][0] == 'attr_date')
assert_(attrs[2][1] == 'DATE yyyy-MM-dd')
assert_(attrs[3][0] == 'attr_datetime_local')
assert_(attrs[3][1] == 'DATE "yyyy-MM-dd HH:mm"')
assert_(attrs[4][0] == 'attr_datetime_missing')
assert_(attrs[4][1] == 'DATE "yyyy-MM-dd HH:mm"')
def test_dateheader_unsupported(self):
ofile = open(test8)
rel, attrs = read_header(ofile)
ofile.close()
assert_(rel == 'test8')
assert_(len(attrs) == 2)
assert_(attrs[0][0] == 'attr_datetime_utc')
assert_(attrs[0][1] == 'DATE "yyyy-MM-dd HH:mm Z"')
assert_(attrs[1][0] == 'attr_datetime_full')
assert_(attrs[1][1] == 'DATE "yy-MM-dd HH:mm:ss z"')
class DateAttributeTest(TestCase):
def setUp(self):
self.data, self.meta = loadarff(test7)
def test_year_attribute(self):
expected = np.array([
'1999',
'2004',
'1817',
'2100',
'2013',
'1631'
], dtype='datetime64[Y]')
assert_array_equal(self.data["attr_year"], expected)
def test_month_attribute(self):
expected = np.array([
'1999-01',
'2004-12',
'1817-04',
'2100-09',
'2013-11',
'1631-10'
], dtype='datetime64[M]')
assert_array_equal(self.data["attr_month"], expected)
def test_date_attribute(self):
expected = np.array([
'1999-01-31',
'2004-12-01',
'1817-04-28',
'2100-09-10',
'2013-11-30',
'1631-10-15'
], dtype='datetime64[D]')
assert_array_equal(self.data["attr_date"], expected)
def test_datetime_local_attribute(self):
expected = np.array([
datetime.datetime(year=1999, month=1, day=31, hour=0, minute=1),
datetime.datetime(year=2004, month=12, day=1, hour=23, minute=59),
datetime.datetime(year=1817, month=4, day=28, hour=13, minute=0),
datetime.datetime(year=2100, month=9, day=10, hour=12, minute=0),
datetime.datetime(year=2013, month=11, day=30, hour=4, minute=55),
datetime.datetime(year=1631, month=10, day=15, hour=20, minute=4)
], dtype='datetime64[m]')
assert_array_equal(self.data["attr_datetime_local"], expected)
def test_datetime_missing(self):
expected = np.array([
'nat',
'2004-12-01T23:59',
'nat',
'nat',
'2013-11-30T04:55',
'1631-10-15T20:04'
], dtype='datetime64[m]')
assert_array_equal(self.data["attr_datetime_missing"], expected)
def test_datetime_timezone(self):
assert_raises(ValueError, loadarff, test8)
if __name__ == "__main__":
run_module_suite()
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