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#genetic algorithm selection routines
#based on galib.
#exception - these classes only work on the scaled fitness
from ga_util import *
import scipy.stats as rv
stats = rv
import pdb
from Numeric import *
from scipy_base.fastumath import *
class selector:
def update(self,pop): pass
def select(self,pop): raise GAError, 'selector.select() must be overridden'
def clear(self): pass
class uniform_selector(selector):
def select(self,pop,cnt = 1):
if cnt == 1: return rv.choice(pop)
res = []
for i in range(cnt): res.append(rv.choice(pop))
return res
class rank_selector(selector):
def select(self,pop,cnt = 1):
pop.sort()
studliest = pop[0].fitness()
tied_for_first = filter(lambda x,y=studliest: x.fitness()==y,pop)
if cnt == 1: return rv.choice(tied_for_first)
res = []
for i in range(cnt): res.append(rv.choice(tied_for_first))
return res
#scores must all be positive
class roulette_selector(selector):
def update(self,pop):
self.pop = pop[:]
sz = len(pop)
if not sz: raise GAError, 'srs_selector - the pop size is 0!'
f =self.pop.fitnesses()
f_max = max(f); f_min = min(f)
if not ( (f_max >= 0 and f_min >= 0) or
(f_max <= 0 and f_min <= 0)):
raise GAError, 'srs_selector requires all fitnesses values to be either strictly positive or strictly negative'
if f_max == f_min: f = ones(shape(f),typecode = Float32)
self.dart_board = add.accumulate(f / sum(f))
def select(self,pop,cnt = 1):
returns = []
for i in range(cnt):
dart = rv.random()
idx = 0
#binary search would be faster
while dart > self.dart_board[idx]: idx = idx + 1
returns.append(self.pop[idx])
if cnt == 1: return returns[0]
else: return returns
def clear(self):
del self.pop
#scores must all be positive
class srs_selector(selector):
def update(self,pop):
sz = len(pop)
if not sz: raise GAError, 'srs_selector - the pop size is 0!'
f =pop.fitnesses()
f_max = max(f); f_min = min(f)
if not ( (f_max >= 0. and f_min >= 0.) or
(f_max <= 0. and f_min <= 0.)):
raise GAError, 'srs_selector requires all fitnesses values to be either strictly positive or strictly negative - min %f, max %f' %(f_min,f_max)
f_avg = sum(f)/sz
if f_avg == 0.: e = ones(shape(f),typecode = Float32)
else:
if pop.min_or_max() == 'max': e = f/f_avg
else: e = (-f+f_max+f_min)/f_avg
self.expected_value = e
garauntee,chance = divmod(e,1.)
# garauntee = floor(e)
# chance = remainder(e,1)
choices = []
for i in xrange(sz): choices = choices + [pop[i]] * int(garauntee[i])
#now deal with the remainder
dart_board = add.accumulate(chance / sum(chance))
for i in range(len(choices),sz):
dart = rv.random()
idx = 0
while dart > dart_board[idx]: idx = idx + 1
choices.append(pop[idx])
self.choices = choices
def select(self,pop,cnt = 1): #ignore the past in pop
res = []
for i in range(cnt): res.append(rv.choice(self.choices))
# for chosen in res: self.choices.remove(chosen)
if cnt == 1: return res[0]
return res
def clear(self):
if hasattr(self,'choices'):
del self.choices
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