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#!/usr/bin/env python
# Created by Pearu Peterson, September 2002
""" Test functions for fftpack.basic module
"""
__usage__ = """
Build fftpack:
python setup_fftpack.py build
Run tests if scipy is installed:
python -c 'import scipy;scipy.fftpack.test(<level>)'
Run tests if fftpack is not installed:
python tests/test_basic.py [<level>]
"""
import sys
from numpy.testing import *
set_package_path()
from fftpack import ifft,fft,fftn,ifftn,rfft,irfft
from fftpack import _fftpack as fftpack
restore_path()
from numpy import arange, add, array, asarray, zeros, dot, exp, pi,\
swapaxes, double, cdouble
import numpy.fft
from numpy.random import rand
def random(size):
return rand(*size)
def get_mat(n):
data = arange(n)
data = add.outer(data,data)
return data
def direct_dft(x):
x = asarray(x)
n = len(x)
y = zeros(n,dtype=cdouble)
w = -arange(n)*(2j*pi/n)
for i in range(n):
y[i] = dot(exp(i*w),x)
return y
def direct_idft(x):
x = asarray(x)
n = len(x)
y = zeros(n,dtype=cdouble)
w = arange(n)*(2j*pi/n)
for i in range(n):
y[i] = dot(exp(i*w),x)/n
return y
def direct_dftn(x):
x = asarray(x)
for axis in range(len(x.shape)):
x = fft(x,axis=axis)
return x
def direct_idftn(x):
x = asarray(x)
for axis in range(len(x.shape)):
x = ifft(x,axis=axis)
return x
def direct_rdft(x):
x = asarray(x)
n = len(x)
w = -arange(n)*(2j*pi/n)
r = zeros(n,dtype=double)
for i in range(n/2+1):
y = dot(exp(i*w),x)
if i:
r[2*i-1] = y.real
if 2*i<n:
r[2*i] = y.imag
else:
r[0] = y.real
return r
def direct_irdft(x):
x = asarray(x)
n = len(x)
x1 = zeros(n,dtype=cdouble)
for i in range(n/2+1):
if i:
if 2*i<n:
x1[i] = x[2*i-1] + 1j* x[2*i]
x1[n-i] = x[2*i-1] - 1j* x[2*i]
else:
x1[i] = x[2*i-1]
else:
x1[0] = x[0]
return direct_idft(x1).real
class test_fft(ScipyTestCase):
def check_definition(self):
x = [1,2,3,4+1j,1,2,3,4+2j]
y = fft(x)
y1 = direct_dft(x)
assert_array_almost_equal(y,y1)
x = [1,2,3,4+0j,5]
assert_array_almost_equal(fft(x),direct_dft(x))
def check_n_argument_real(self):
x1 = [1,2,3,4]
x2 = [1,2,3,4]
y = fft([x1,x2],n=4)
assert_equal(y.shape,(2,4))
assert_array_almost_equal(y[0],direct_dft(x1))
assert_array_almost_equal(y[1],direct_dft(x2))
def _check_n_argument_complex(self):
x1 = [1,2,3,4+1j]
x2 = [1,2,3,4+1j]
y = fft([x1,x2],n=4)
assert_equal(y.shape,(2,4))
assert_array_almost_equal(y[0],direct_dft(x1))
assert_array_almost_equal(y[1],direct_dft(x2))
def check_djbfft(self):
for i in range(2,14):
n = 2**i
x = range(n)
y = fftpack.zfft(x)
y2 = numpy.fft.fft(x)
assert_array_almost_equal(y,y2)
y = fftpack.zrfft(x)
assert_array_almost_equal(y,y2)
def bench_random(self,level=5):
from numpy.fft import fft as numpy_fft
print
print ' Fast Fourier Transform'
print '================================================='
print ' | real input | complex input '
print '-------------------------------------------------'
print ' size | scipy | numpy | scipy | numpy '
print '-------------------------------------------------'
for size,repeat in [(100,7000),(1000,2000),
(256,10000),
(512,10000),
(1024,1000),
(2048,1000),
(2048*2,500),
(2048*4,500),
]:
print '%5s' % size,
sys.stdout.flush()
for x in [random([size]).astype(double),
random([size]).astype(cdouble)+random([size]).astype(cdouble)*1j
]:
if size > 500: y = fft(x)
else: y = direct_dft(x)
assert_array_almost_equal(fft(x),y)
print '|%8.2f' % self.measure('fft(x)',repeat),
sys.stdout.flush()
assert_array_almost_equal(numpy_fft(x),y)
print '|%8.2f' % self.measure('numpy_fft(x)',repeat),
sys.stdout.flush()
print ' (secs for %s calls)' % (repeat)
sys.stdout.flush()
class test_ifft(ScipyTestCase):
def check_definition(self):
x = [1,2,3,4+1j,1,2,3,4+2j]
y = ifft(x)
y1 = direct_idft(x)
assert_array_almost_equal(y,y1)
x = [1,2,3,4+0j,5]
assert_array_almost_equal(ifft(x),direct_idft(x))
x = [1,2,3,4,1,2,3,4]
y = ifft(x)
y1 = direct_idft(x)
assert_array_almost_equal(y,y1)
x = [1,2,3,4,5]
assert_array_almost_equal(ifft(x),direct_idft(x))
def check_djbfft(self):
for i in range(2,14):
n = 2**i
x = range(n)
y = fftpack.zfft(x,direction=-1)
y2 = numpy.fft.ifft(x)
assert_array_almost_equal(y,y2)
y = fftpack.zrfft(x,direction=-1)
assert_array_almost_equal(y,y2)
def check_random_complex(self):
for size in [1,51,111,100,200,64,128,256,1024]:
x = random([size]).astype(cdouble)
x = random([size]).astype(cdouble) +1j*x
assert_array_almost_equal (ifft(fft(x)),x)
assert_array_almost_equal (fft(ifft(x)),x)
def check_random_real(self):
for size in [1,51,111,100,200,64,128,256,1024]:
x = random([size]).astype(double)
assert_array_almost_equal (ifft(fft(x)),x)
assert_array_almost_equal (fft(ifft(x)),x)
def bench_random(self,level=5):
from numpy.fft import ifft as numpy_ifft
print
print ' Inverse Fast Fourier Transform'
print '==============================================='
print ' | real input | complex input '
print '-----------------------------------------------'
print ' size | scipy | numpy | scipy | numpy '
print '-----------------------------------------------'
for size,repeat in [(100,7000),(1000,2000),
(256,10000),
(512,10000),
(1024,1000),
(2048,1000),
(2048*2,500),
(2048*4,500),
]:
print '%5s' % size,
sys.stdout.flush()
for x in [random([size]).astype(double),
random([size]).astype(cdouble)+random([size]).astype(cdouble)*1j
]:
if size > 500: y = ifft(x)
else: y = direct_idft(x)
assert_array_almost_equal(ifft(x),y)
print '|%8.2f' % self.measure('ifft(x)',repeat),
sys.stdout.flush()
assert_array_almost_equal(numpy_ifft(x),y)
print '|%8.2f' % self.measure('numpy_ifft(x)',repeat),
sys.stdout.flush()
print ' (secs for %s calls)' % (repeat)
sys.stdout.flush()
class test_rfft(ScipyTestCase):
def check_definition(self):
x = [1,2,3,4,1,2,3,4]
y = rfft(x)
y1 = direct_rdft(x)
assert_array_almost_equal(y,y1)
x = [1,2,3,4,1,2,3,4,5]
y = rfft(x)
y1 = direct_rdft(x)
assert_array_almost_equal(y,y1)
def check_djbfft(self):
from numpy.fft import fft as numpy_fft
for i in range(2,14):
n = 2**i
x = range(n)
y2 = numpy_fft(x)
y1 = zeros((n,),dtype=double)
y1[0] = y2[0].real
y1[-1] = y2[n/2].real
for k in range(1,n/2):
y1[2*k-1] = y2[k].real
y1[2*k] = y2[k].imag
y = fftpack.drfft(x)
assert_array_almost_equal(y,y1)
def bench_random(self,level=5):
from numpy.fft import rfft as numpy_rfft
print
print 'Fast Fourier Transform (real data)'
print '=================================='
print ' size | scipy | numpy '
print '----------------------------------'
for size,repeat in [(100,7000),(1000,2000),
(256,10000),
(512,10000),
(1024,1000),
(2048,1000),
(2048*2,500),
(2048*4,500),
]:
print '%5s' % size,
sys.stdout.flush()
x = random([size]).astype(double)
print '|%8.2f' % self.measure('rfft(x)',repeat),
sys.stdout.flush()
print '|%8.2f' % self.measure('numpy_rfft(x)',repeat),
sys.stdout.flush()
print ' (secs for %s calls)' % (repeat)
sys.stdout.flush()
class test_irfft(ScipyTestCase):
def check_definition(self):
x = [1,2,3,4,1,2,3,4]
x1 = [1,2+3j,4+1j,2+3j,4,2-3j,4-1j,2-3j]
y = irfft(x)
y1 = direct_irdft(x)
assert_array_almost_equal(y,y1)
assert_array_almost_equal(y,ifft(x1))
x = [1,2,3,4,1,2,3,4,5]
x1 = [1,2+3j,4+1j,2+3j,4+5j,4-5j,2-3j,4-1j,2-3j]
y = irfft(x)
y1 = direct_irdft(x)
assert_array_almost_equal(y,y1)
assert_array_almost_equal(y,ifft(x1))
def check_djbfft(self):
from numpy.fft import ifft as numpy_ifft
for i in range(2,14):
n = 2**i
x = range(n)
x1 = zeros((n,),dtype=cdouble)
x1[0] = x[0]
for k in range(1,n/2):
x1[k] = x[2*k-1]+1j*x[2*k]
x1[n-k] = x[2*k-1]-1j*x[2*k]
x1[n/2] = x[-1]
y1 = numpy_ifft(x1)
y = fftpack.drfft(x,direction=-1)
assert_array_almost_equal(y,y1)
def check_random_real(self):
for size in [1,51,111,100,200,64,128,256,1024]:
x = random([size]).astype(double)
assert_array_almost_equal (irfft(rfft(x)),x)
assert_array_almost_equal (rfft(irfft(x)),x)
def bench_random(self,level=5):
from numpy.fft import irfft as numpy_irfft
print
print 'Inverse Fast Fourier Transform (real data)'
print '=================================='
print ' size | scipy | numpy '
print '----------------------------------'
for size,repeat in [(100,7000),(1000,2000),
(256,10000),
(512,10000),
(1024,1000),
(2048,1000),
(2048*2,500),
(2048*4,500),
]:
print '%5s' % size,
sys.stdout.flush()
x = random([size]).astype(double)
x1 = zeros(size/2+1,dtype=cdouble)
x1[0] = x[0]
for i in range(1,size/2):
x1[i] = x[2*i-1] + 1j * x[2*i]
if not size%2:
x1[-1] = x[-1]
y = irfft(x)
print '|%8.2f' % self.measure('irfft(x)',repeat),
sys.stdout.flush()
assert_array_almost_equal(numpy_irfft(x1,size),y)
print '|%8.2f' % self.measure('numpy_irfft(x1,size)',repeat),
sys.stdout.flush()
print ' (secs for %s calls)' % (repeat)
sys.stdout.flush()
class test_fftn(ScipyTestCase):
def check_definition(self):
x = [[1,2,3],[4,5,6],[7,8,9]]
y = fftn(x)
assert_array_almost_equal(y,direct_dftn(x))
x = random((20,26))
assert_array_almost_equal(fftn(x),direct_dftn(x))
x = random((5,4,3,20))
assert_array_almost_equal(fftn(x),direct_dftn(x))
def check_axes_argument(self):
#plane == ji_plane, x== kji_space
plane1 = [[1,2,3],[4,5,6],[7,8,9]]
plane2 = [[10,11,12],[13,14,15],[16,17,18]]
plane3 = [[19,20,21],[22,23,24],[25,26,27]]
ki_plane1 = [[1,2,3],[10,11,12],[19,20,21]]
ki_plane2 = [[4,5,6],[13,14,15],[22,23,24]]
ki_plane3 = [[7,8,9],[16,17,18],[25,26,27]]
jk_plane1 = [[1,10,19],[4,13,22],[7,16,25]]
jk_plane2 = [[2,11,20],[5,14,23],[8,17,26]]
jk_plane3 = [[3,12,21],[6,15,24],[9,18,27]]
kj_plane1 = [[1,4,7],[10,13,16],[19,22,25]]
kj_plane2 = [[2,5,8],[11,14,17],[20,23,26]]
kj_plane3 = [[3,6,9],[12,15,18],[21,24,27]]
ij_plane1 = [[1,4,7],[2,5,8],[3,6,9]]
ij_plane2 = [[10,13,16],[11,14,17],[12,15,18]]
ij_plane3 = [[19,22,25],[20,23,26],[21,24,27]]
ik_plane1 = [[1,10,19],[2,11,20],[3,12,21]]
ik_plane2 = [[4,13,22],[5,14,23],[6,15,24]]
ik_plane3 = [[7,16,25],[8,17,26],[9,18,27]]
ijk_space = [jk_plane1,jk_plane2,jk_plane3]
ikj_space = [kj_plane1,kj_plane2,kj_plane3]
jik_space = [ik_plane1,ik_plane2,ik_plane3]
jki_space = [ki_plane1,ki_plane2,ki_plane3]
kij_space = [ij_plane1,ij_plane2,ij_plane3]
x = array([plane1,plane2,plane3])
assert_array_almost_equal(fftn(x),fftn(x,axes=(-3,-2,-1))) # kji_space
assert_array_almost_equal(fftn(x),fftn(x,axes=(0,1,2)))
y = fftn(x,axes=(2,1,0)) # ijk_space
assert_array_almost_equal(swapaxes(y,-1,-3),fftn(ijk_space))
y = fftn(x,axes=(2,0,1)) # ikj_space
assert_array_almost_equal(swapaxes(swapaxes(y,-1,-3),
-1,-2)
,fftn(ikj_space))
y = fftn(x,axes=(1,2,0)) # jik_space
assert_array_almost_equal(swapaxes(swapaxes(y,-1,-3),
-3,-2)
,fftn(jik_space))
y = fftn(x,axes=(1,0,2)) # jki_space
assert_array_almost_equal(swapaxes(y,-2,-3),fftn(jki_space))
y = fftn(x,axes=(0,2,1)) # kij_space
assert_array_almost_equal(swapaxes(y,-2,-1),
fftn(kij_space))
y = fftn(x,axes=(-2,-1)) # ji_plane
assert_array_almost_equal(fftn(plane1),y[0])
assert_array_almost_equal(fftn(plane2),y[1])
assert_array_almost_equal(fftn(plane3),y[2])
y = fftn(x,axes=(1,2)) # ji_plane
assert_array_almost_equal(fftn(plane1),y[0])
assert_array_almost_equal(fftn(plane2),y[1])
assert_array_almost_equal(fftn(plane3),y[2])
y = fftn(x,axes=(-3,-2)) # kj_plane
assert_array_almost_equal(fftn(x[:,:,0]),y[:,:,0])
assert_array_almost_equal(fftn(x[:,:,1]),y[:,:,1])
assert_array_almost_equal(fftn(x[:,:,2]),y[:,:,2])
y = fftn(x,axes=(-3,-1)) # ki_plane
assert_array_almost_equal(fftn(x[:,0,:]),y[:,0,:])
assert_array_almost_equal(fftn(x[:,1,:]),y[:,1,:])
assert_array_almost_equal(fftn(x[:,2,:]),y[:,2,:])
y = fftn(x,axes=(-1,-2)) # ij_plane
assert_array_almost_equal(fftn(ij_plane1),swapaxes(y[0],-2,-1))
assert_array_almost_equal(fftn(ij_plane2),swapaxes(y[1],-2,-1))
assert_array_almost_equal(fftn(ij_plane3),swapaxes(y[2],-2,-1))
y = fftn(x,axes=(-1,-3)) # ik_plane
assert_array_almost_equal(fftn(ik_plane1),swapaxes(y[:,0,:],-1,-2))
assert_array_almost_equal(fftn(ik_plane2),swapaxes(y[:,1,:],-1,-2))
assert_array_almost_equal(fftn(ik_plane3),swapaxes(y[:,2,:],-1,-2))
y = fftn(x,axes=(-2,-3)) # jk_plane
assert_array_almost_equal(fftn(jk_plane1),swapaxes(y[:,:,0],-1,-2))
assert_array_almost_equal(fftn(jk_plane2),swapaxes(y[:,:,1],-1,-2))
assert_array_almost_equal(fftn(jk_plane3),swapaxes(y[:,:,2],-1,-2))
y = fftn(x,axes=(-1,)) # i_line
for i in range(3):
for j in range(3):
assert_array_almost_equal(fft(x[i,j,:]),y[i,j,:])
y = fftn(x,axes=(-2,)) # j_line
for i in range(3):
for j in range(3):
assert_array_almost_equal(fft(x[i,:,j]),y[i,:,j])
y = fftn(x,axes=(0,)) # k_line
for i in range(3):
for j in range(3):
assert_array_almost_equal(fft(x[:,i,j]),y[:,i,j])
y = fftn(x,axes=()) # point
assert_array_almost_equal(y,x)
def check_shape_argument(self):
small_x = [[1,2,3],[4,5,6]]
large_x1 = [[1,2,3,0],[4,5,6,0],[0,0,0,0],[0,0,0,0]]
y = fftn(small_x,shape=(4,4))
assert_array_almost_equal (y,fftn(large_x1))
y = fftn(small_x,shape=(3,4))
assert_array_almost_equal (y,fftn(large_x1[:-1]))
def check_shape_axes_argument(self):
small_x = [[1,2,3],[4,5,6],[7,8,9]]
large_x1 = array([[1,2,3,0],
[4,5,6,0],
[7,8,9,0],
[0,0,0,0]])
y = fftn(small_x,shape=(4,4),axes=(-1,))
for i in range(4):
assert_array_almost_equal (y[i],fft(large_x1[i]))
y = fftn(small_x,shape=(4,4),axes=(-2,))
for i in range(4):
assert_array_almost_equal (y[:,i],fft(large_x1[:,i]))
y = fftn(small_x,shape=(4,4),axes=(-2,-1))
assert_array_almost_equal (y,fftn(large_x1))
y = fftn(small_x,shape=(4,4),axes=(-1,-2))
assert_array_almost_equal (y,swapaxes(\
fftn(swapaxes(large_x1,-1,-2)),-1,-2))
def bench_random(self,level=5):
from numpy.fft import fftn as numpy_fftn
print
print ' Multi-dimensional Fast Fourier Transform'
print '==================================================='
print ' | real input | complex input '
print '---------------------------------------------------'
print ' size | scipy | numpy | scipy | numpy '
print '---------------------------------------------------'
for size,repeat in [((100,100),100),((1000,100),7),
((256,256),10),
((512,512),3),
]:
print '%9s' % ('%sx%s'%size),
sys.stdout.flush()
for x in [random(size).astype(double),
random(size).astype(cdouble)+random(size).astype(cdouble)*1j
]:
y = fftn(x)
#if size > 500: y = fftn(x)
#else: y = direct_dft(x)
assert_array_almost_equal(fftn(x),y)
print '|%8.2f' % self.measure('fftn(x)',repeat),
sys.stdout.flush()
assert_array_almost_equal(numpy_fftn(x),y)
print '|%8.2f' % self.measure('numpy_fftn(x)',repeat),
sys.stdout.flush()
print ' (secs for %s calls)' % (repeat)
sys.stdout.flush()
class test_ifftn(ScipyTestCase):
def check_definition(self):
x = [[1,2,3],[4,5,6],[7,8,9]]
y = ifftn(x)
assert_array_almost_equal(y,direct_idftn(x))
x = random((20,26))
assert_array_almost_equal(ifftn(x),direct_idftn(x))
x = random((5,4,3,20))
assert_array_almost_equal(ifftn(x),direct_idftn(x))
def check_random_complex(self):
for size in [1,2,51,32,64,92]:
x = random([size,size]) + 1j*random([size,size])
assert_array_almost_equal (ifftn(fftn(x)),x)
assert_array_almost_equal (fftn(ifftn(x)),x)
if __name__ == "__main__":
ScipyTest().run()
|