1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
|
#!/usr/bin/env python
from distutils.core import setup, Extension
import glob
import os, socket
import sys
# default settings
library_dirs_list= []
libraries_list = ['lapack', 'blas', 'g2c']
superlu_defs = [('USE_VENDOR_BLAS',1)]
f77_defs = []
linky=[]
compily=[]
umfpack_defs = [('DINT', 1), ('NBLAS', 1)] # most basic configuration, no BLAS
umfpack_libraries = []
umfpack_include_dirs = ['amd', 'umfpack']
umfpack_library_dirs = []
#umfpack_defs = [('DINT', 1), ('CBLAS', 1)] # with atlas c-blas (http://math-atlas.sourceforge.net)
#umfpack_libraries = ['atlas', 'cblas', 'm']
#umfpack_include_dirs = ['amd', 'umfpack'] # you may need to set this to find the atlas
#umfpack_library_dirs = []
hostname = socket.gethostname()
if hostname in ['bree', 'brokoli', 'givens2', 'givens4', 'nedelec', 'gondor']:
# SuSE Linux 8.x and 9.0
libraries_list = ['lapack', 'blas', 'g2c']
elif hostname == 'maxwell':
# AMD Opteron 'x86-64' architecture using ACML
libraries_list = ['acml', 'g2c']
library_dirs_list = ['/opt/acml/gnu64/lib']
elif hostname == 'sysiphus':
# Linux RedHat 7.3 2.4.18-10 i686 with atlas Lapack routines
library_dirs_list= ['/hg/u/vasseur/Linux/lib/atlas']
libraries_list = ['lapack', 'f77blas', 'cblas', 'atlas', 'g2c']
elif hostname == 'sophokles':
#SunOS sophokles 5.8 Generic_108528-15 sun4u sparc SUNW,Sun-Fire-880
library_dirs_list= ['/hg/s/solaris/8/opt/SUNWspro/lib']
libraries_list = ['F77', 'sunperf', 'fui', 'fsu', 'sunmath']
elif hostname == 'sim0':
# Linux sim0 2.2.19-7.0.16enterprise #1 SMP Wed Mar 13 13:23:22 EST 2002 i686 unknown
library_dirs_list = ['/home/geus/linux/lib']
libraries_list = ['lapack', 'blas', 'g2c']
elif hostname == 'stardust':
# HP-UX stardust B.11.11 U 9000/800 3761215035 unlimited-user license
library_dirs_list = ['/home/infk/geus/lib/pa20_64']
libraries_list = ['lapack']
elif hostname == 'zuse':
# SunOS zuse 5.6 Generic_105181-21 sun4u sparc SUNW,Ultra-Enterprise
library_dirs_list = ['/software/SunOS/5.X/opt/SUNWspro/WS6/lib']
libraries_list = ['F77', 'sunperf', 'fui', 'fsu', 'sunmath']
elif hostname == 'Rivendell':
# WinXP, using VC++ and Intel MKL
#
# Uses BLAS and LAPACK from the Intel Math Kernel Library 5.2
# DLL directory must be in the PATH
library_dirs_list = [r'C:\Program Files\Intel\MKL\ia32\lib']
libraries_list = ['mkl_c_dll']
superlu_defs = [("NO_TIMER",1), ("NoChange",1), ('USE_VENDOR_BLAS',1)]
f77_defs = [("NOF77UNDERSCORE",1)]
elif hostname == 'nedelec-vmware':
# Win32 using MinGW
libraries_list = ['lapack', 'blas', 'g2c']
superlu_defs = [("NO_TIMER",1), ('USE_VENDOR_BLAS',1)]
elif hostname == 'psw283.psi.ch':
# OSF1 psw283.psi.ch V4.0 1530 alpha
library_dirs_list = ['/data/geus/lib']
libraries_list = ['dxml']
elif sys.platform == 'darwin':
superlu_defs = [('USE_VENDOR_BLAS',1)]
library_dirs_list = ['/System/Library/Frameworks']
libraries_list = []
f77_defs = []
# the following 'linky' arguments must not be concatenated together into a single
# string, c.f. <http://mail.python.org/pipermail/distutils-sig/2003-December/003532.html>
if sys.exec_prefix == '/sw':
# fink python
linky=["-faltivec","-framework","vecLib","-bundle_loader","/sw/bin/python"]
else:
# Apple python
linky=["-faltivec","-framework","vecLib"]
# The python Framework build is compiled with (and propagates to all library builds) the
# '-fno-common' flag. Nobody seems to know why.
# (c.f. <https://sourceforge.net/tracker/?func=detail&atid=105470&aid=768306&group_id=5470>)
# This flag wreaks havoc with the nightmarishly circular declarations in the itsolvers module.
# We reset it by appending this flag:
compily=["-fcommon"]
elif sys.platform == 'linux2':
## fix for Fedora core 4, 'g2c' doesn't exist and isn't required
if 'redhat-release' in os.listdir('/etc'):
f = open('/etc/redhat-release', 'r')
if 'release 4' in f.read():
libraries_list = ['lapack', 'blas']
f.close()
ext_modules = [Extension('spmatrix', ['Src/spmatrixmodule.c']),
Extension('itsolvers', ['Src/itsolversmodule.c',
'Src/pcg.c',
'Src/gmres.c',
'Src/minres.c',
'Src/qmrs.c',
'Src/bicgstab.c',
'Src/cgs.c'],
library_dirs=library_dirs_list,
libraries=libraries_list,
define_macros=f77_defs,
extra_compile_args=compily,
extra_link_args=linky),
Extension('precon', [os.path.join('Src', 'preconmodule.c')],
library_dirs=library_dirs_list,
libraries=libraries_list,
define_macros=f77_defs,extra_link_args=linky),
Extension('superlu', [os.path.join('Src', 'superlumodule.c'),
"superlu/dcolumn_bmod.c",
"superlu/dcolumn_dfs.c",
"superlu/dcomplex.c",
"superlu/scomplex.c",
"superlu/dcopy_to_ucol.c",
"superlu/dgscon.c",
"superlu/dgsequ.c",
"superlu/dgsrfs.c",
"superlu/dgssv.c",
"superlu/dgssvx.c",
"superlu/dgstrf.c",
"superlu/dgstrs.c",
"superlu/dlacon.c",
"superlu/dlamch.c",
"superlu/dlangs.c",
"superlu/dlaqgs.c",
"superlu/dmemory.c",
"superlu/colamd.c",
"superlu/dpanel_bmod.c",
"superlu/dpanel_dfs.c",
"superlu/dpivotL.c",
"superlu/dpivotgrowth.c",
"superlu/dpruneL.c",
"superlu/dreadhb.c",
"superlu/dsnode_bmod.c",
"superlu/dsnode_dfs.c",
"superlu/dsp_blas2.c",
"superlu/dsp_blas3.c",
"superlu/superlu_timer.c",
"superlu/dutil.c",
"superlu/dzsum1.c",
"superlu/get_perm_c.c",
"superlu/icmax1.c",
"superlu/izmax1.c",
"superlu/lsame.c",
"superlu/memory.c",
"superlu/mmd.c",
"superlu/relax_snode.c",
"superlu/sp_coletree.c",
"superlu/sp_ienv.c",
"superlu/sp_preorder.c",
"superlu/util.c",
"superlu/xerbla.c"],
define_macros=superlu_defs,
include_dirs=["superlu"],
library_dirs=library_dirs_list,
libraries=libraries_list,extra_link_args=linky),
Extension('jdsym', [os.path.join('Src', 'jdsymmodule.c')],
library_dirs=library_dirs_list,
libraries=libraries_list,
define_macros=f77_defs,extra_link_args=linky),
Extension('umfpack', sources=[os.path.join('Src', 'umfpackmodule.c'),
'amd/amd_aat.c',
'amd/amd_1.c',
'amd/amd_2.c',
'amd/amd_dump.c',
'amd/amd_postorder.c',
'amd/amd_post_tree.c',
'amd/amd_defaults.c',
'amd/amd_order.c',
'amd/amd_control.c',
'amd/amd_info.c',
'amd/amd_valid.c',
'umfpack/umf_analyze.c',
'umfpack/umf_apply_order.c',
'umfpack/umf_colamd.c',
'umfpack/umf_free.c',
'umfpack/umf_fsize.c',
'umfpack/umf_is_permutation.c',
'umfpack/umf_malloc.c',
'umfpack/umf_realloc.c',
'umfpack/umf_report_perm.c',
'umfpack/umf_singletons.c',
'umfpack/umfpack_timer.c',
'umfpack/umfpack_tictoc.c',
'umfpack/umf_lhsolve.c',
'umfpack/umf_uhsolve.c',
'umfpack/umf_triplet_map_nox.c',
'umfpack/umf_triplet_nomap_x.c',
'umfpack/umf_triplet_nomap_nox.c',
'umfpack/umf_triplet_map_x.c',
'umfpack/umf_assemble_fixq.c',
'umfpack/umf_assemble.c',
'umfpack/umf_blas3_update.c',
'umfpack/umf_build_tuples.c',
'umfpack/umf_create_element.c',
'umfpack/umf_dump.c',
'umfpack/umf_extend_front.c',
'umfpack/umf_garbage_collection.c',
'umfpack/umf_get_memory.c',
'umfpack/umf_init_front.c',
'umfpack/umf_kernel.c',
'umfpack/umf_kernel_init.c',
'umfpack/umf_kernel_wrapup.c',
'umfpack/umf_local_search.c',
'umfpack/umf_lsolve.c',
'umfpack/umf_ltsolve.c',
'umfpack/umf_mem_alloc_element.c',
'umfpack/umf_mem_alloc_head_block.c',
'umfpack/umf_mem_alloc_tail_block.c',
'umfpack/umf_mem_free_tail_block.c',
'umfpack/umf_mem_init_memoryspace.c',
'umfpack/umf_report_vector.c',
'umfpack/umf_row_search.c',
'umfpack/umf_scale_column.c',
'umfpack/umf_set_stats.c',
'umfpack/umf_solve.c',
'umfpack/umf_symbolic_usage.c',
'umfpack/umf_transpose.c',
'umfpack/umf_tuple_lengths.c',
'umfpack/umf_usolve.c',
'umfpack/umf_utsolve.c',
'umfpack/umf_valid_numeric.c',
'umfpack/umf_valid_symbolic.c',
'umfpack/umf_grow_front.c',
'umfpack/umf_start_front.c',
'umfpack/umf_2by2.c',
'umfpack/umf_store_lu.c',
'umfpack/umf_scale.c',
'umfpack/umfpack_wsolve.c',
'umfpack/umfpack_col_to_triplet.c',
'umfpack/umfpack_defaults.c',
'umfpack/umfpack_free_numeric.c',
'umfpack/umfpack_free_symbolic.c',
'umfpack/umfpack_get_numeric.c',
'umfpack/umfpack_get_lunz.c',
'umfpack/umfpack_get_symbolic.c',
'umfpack/umfpack_numeric.c',
'umfpack/umfpack_qsymbolic.c',
'umfpack/umfpack_report_control.c',
'umfpack/umfpack_report_info.c',
'umfpack/umfpack_report_matrix.c',
'umfpack/umfpack_report_numeric.c',
'umfpack/umfpack_report_perm.c',
'umfpack/umfpack_report_status.c',
'umfpack/umfpack_report_symbolic.c',
'umfpack/umfpack_report_triplet.c',
'umfpack/umfpack_report_vector.c',
'umfpack/umfpack_solve.c',
'umfpack/umfpack_symbolic.c',
'umfpack/umfpack_transpose.c',
'umfpack/umfpack_triplet_to_col.c',
'umfpack/umfpack_scale.c',
'umfpack/umfpack_load_numeric.c',
'umfpack/umfpack_save_numeric.c',
'umfpack/umfpack_load_symbolic.c',
'umfpack/umfpack_save_symbolic.c'],
define_macros=umfpack_defs, include_dirs=umfpack_include_dirs,
libraries=umfpack_libraries, library_dirs=umfpack_library_dirs)
]
execfile(os.path.join('Lib', 'pysparse_version.py'))
setup(name = 'pysparse',
version = version,
description = 'Python Sparse Matrix Package',
author = 'Roman Geus',
author_email = 'roman@geus.ch',
license = 'BSD style',
url = 'http://www.geus.ch',
packages = [''],
package_dir = {'': 'Lib'},
include_dirs = ['Include'],
headers = glob.glob(os.path.join ("Include","pysparse","*.h")),
ext_modules = ext_modules
)
|
