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# Test interfaces to fortran blas.
#
# The tests are more of interface than they are of the underlying blas.
# Only very small matrices checked -- N=3 or so.
#
# !! Complex calculations really aren't checked that carefully.
# !! Only real valued complex numbers are used in tests.
from numpy import *
import sys
from numpy.testing import *
set_package_path()
from linalg import fblas
restore_path()
#decimal accuracy to require between Python and LAPACK/BLAS calculations
accuracy = 5
# Since numpy.dot likely uses the same blas, use this routine
# to check.
def matrixmultiply(a, b):
if len(b.shape) == 1:
b_is_vector = True
b = b[:,newaxis]
else:
b_is_vector = False
assert a.shape[1] == b.shape[0]
c = zeros((a.shape[0], b.shape[1]), common_type(a, b))
for i in xrange(a.shape[0]):
for j in xrange(b.shape[1]):
s = 0
for k in xrange(a.shape[1]):
s += a[i,k] * b[k, j]
c[i,j] = s
if b_is_vector:
c = c.reshape((a.shape[0],))
return c
##################################################
### Test blas ?axpy
class base_axpy(NumpyTestCase):
def check_default_a(self):
x = arange(3.,dtype=self.dtype)
y = arange(3.,dtype=x.dtype)
real_y = x*1.+y
self.blas_func(x,y)
assert_array_equal(real_y,y)
def check_simple(self):
x = arange(3.,dtype=self.dtype)
y = arange(3.,dtype=x.dtype)
real_y = x*3.+y
self.blas_func(x,y,a=3.)
assert_array_equal(real_y,y)
def check_x_stride(self):
x = arange(6.,dtype=self.dtype)
y = zeros(3,x.dtype)
y = arange(3.,dtype=x.dtype)
real_y = x[::2]*3.+y
self.blas_func(x,y,a=3.,n=3,incx=2)
assert_array_equal(real_y,y)
def check_y_stride(self):
x = arange(3.,dtype=self.dtype)
y = zeros(6,x.dtype)
real_y = x*3.+y[::2]
self.blas_func(x,y,a=3.,n=3,incy=2)
assert_array_equal(real_y,y[::2])
def check_x_and_y_stride(self):
x = arange(12.,dtype=self.dtype)
y = zeros(6,x.dtype)
real_y = x[::4]*3.+y[::2]
self.blas_func(x,y,a=3.,n=3,incx=4,incy=2)
assert_array_equal(real_y,y[::2])
def check_x_bad_size(self):
x = arange(12.,dtype=self.dtype)
y = zeros(6,x.dtype)
try:
self.blas_func(x,y,n=4,incx=5)
except: # what kind of error should be caught?
return
# should catch error and never get here
assert(0)
def check_y_bad_size(self):
x = arange(12.,dtype=complex64)
y = zeros(6,x.dtype)
try:
self.blas_func(x,y,n=3,incy=5)
except: # what kind of error should be caught?
return
# should catch error and never get here
assert(0)
try:
class test_saxpy(base_axpy):
blas_func = fblas.saxpy
dtype = float32
except AttributeError:
class test_saxpy: pass
class test_daxpy(base_axpy):
blas_func = fblas.daxpy
dtype = float64
try:
class test_caxpy(base_axpy):
blas_func = fblas.caxpy
dtype = complex64
except AttributeError:
class test_caxpy: pass
class test_zaxpy(base_axpy):
blas_func = fblas.zaxpy
dtype = complex128
##################################################
### Test blas ?scal
class base_scal(NumpyTestCase):
def check_simple(self):
x = arange(3.,dtype=self.dtype)
real_x = x*3.
self.blas_func(3.,x)
assert_array_equal(real_x,x)
def check_x_stride(self):
x = arange(6.,dtype=self.dtype)
real_x = x.copy()
real_x[::2] = x[::2]*array(3.,self.dtype)
self.blas_func(3.,x,n=3,incx=2)
assert_array_equal(real_x,x)
def check_x_bad_size(self):
x = arange(12.,dtype=self.dtype)
try:
self.blas_func(2.,x,n=4,incx=5)
except: # what kind of error should be caught?
return
# should catch error and never get here
assert(0)
try:
class test_sscal(base_scal):
blas_func = fblas.sscal
dtype = float32
except AttributeError:
class test_sscal: pass
class test_dscal(base_scal):
blas_func = fblas.dscal
dtype = float64
try:
class test_cscal(base_scal):
blas_func = fblas.cscal
dtype = complex64
except AttributeError:
class test_cscal: pass
class test_zscal(base_scal):
blas_func = fblas.zscal
dtype = complex128
##################################################
### Test blas ?copy
class base_copy(NumpyTestCase):
def check_simple(self):
x = arange(3.,dtype=self.dtype)
y = zeros(shape(x),x.dtype)
self.blas_func(x,y)
assert_array_equal(x,y)
def check_x_stride(self):
x = arange(6.,dtype=self.dtype)
y = zeros(3,x.dtype)
self.blas_func(x,y,n=3,incx=2)
assert_array_equal(x[::2],y)
def check_y_stride(self):
x = arange(3.,dtype=self.dtype)
y = zeros(6,x.dtype)
self.blas_func(x,y,n=3,incy=2)
assert_array_equal(x,y[::2])
def check_x_and_y_stride(self):
x = arange(12.,dtype=self.dtype)
y = zeros(6,x.dtype)
self.blas_func(x,y,n=3,incx=4,incy=2)
assert_array_equal(x[::4],y[::2])
def check_x_bad_size(self):
x = arange(12.,dtype=self.dtype)
y = zeros(6,x.dtype)
try:
self.blas_func(x,y,n=4,incx=5)
except: # what kind of error should be caught?
return
# should catch error and never get here
assert(0)
def check_y_bad_size(self):
x = arange(12.,dtype=complex64)
y = zeros(6,x.dtype)
try:
self.blas_func(x,y,n=3,incy=5)
except: # what kind of error should be caught?
return
# should catch error and never get here
assert(0)
#def check_y_bad_type(self):
## Hmmm. Should this work? What should be the output.
# x = arange(3.,dtype=self.dtype)
# y = zeros(shape(x))
# self.blas_func(x,y)
# assert_array_equal(x,y)
try:
class test_scopy(base_copy):
blas_func = fblas.scopy
dtype = float32
except AttributeError:
class test_scopy: pass
class test_dcopy(base_copy):
blas_func = fblas.dcopy
dtype = float64
try:
class test_ccopy(base_copy):
blas_func = fblas.ccopy
dtype = complex64
except AttributeError:
class test_ccopy: pass
class test_zcopy(base_copy):
blas_func = fblas.zcopy
dtype = complex128
##################################################
### Test blas ?swap
class base_swap(NumpyTestCase):
def check_simple(self):
x = arange(3.,dtype=self.dtype)
y = zeros(shape(x),x.dtype)
desired_x = y.copy()
desired_y = x.copy()
self.blas_func(x,y)
assert_array_equal(desired_x,x)
assert_array_equal(desired_y,y)
def check_x_stride(self):
x = arange(6.,dtype=self.dtype)
y = zeros(3,x.dtype)
desired_x = y.copy()
desired_y = x.copy()[::2]
self.blas_func(x,y,n=3,incx=2)
assert_array_equal(desired_x,x[::2])
assert_array_equal(desired_y,y)
def check_y_stride(self):
x = arange(3.,dtype=self.dtype)
y = zeros(6,x.dtype)
desired_x = y.copy()[::2]
desired_y = x.copy()
self.blas_func(x,y,n=3,incy=2)
assert_array_equal(desired_x,x)
assert_array_equal(desired_y,y[::2])
def check_x_and_y_stride(self):
x = arange(12.,dtype=self.dtype)
y = zeros(6,x.dtype)
desired_x = y.copy()[::2]
desired_y = x.copy()[::4]
self.blas_func(x,y,n=3,incx=4,incy=2)
assert_array_equal(desired_x,x[::4])
assert_array_equal(desired_y,y[::2])
def check_x_bad_size(self):
x = arange(12.,dtype=self.dtype)
y = zeros(6,x.dtype)
try:
self.blas_func(x,y,n=4,incx=5)
except: # what kind of error should be caught?
return
# should catch error and never get here
assert(0)
def check_y_bad_size(self):
x = arange(12.,dtype=complex64)
y = zeros(6,x.dtype)
try:
self.blas_func(x,y,n=3,incy=5)
except: # what kind of error should be caught?
return
# should catch error and never get here
assert(0)
try:
class test_sswap(base_swap):
blas_func = fblas.sswap
dtype = float32
except AttributeError:
class test_sswap: pass
class test_dswap(base_swap):
blas_func = fblas.dswap
dtype = float64
try:
class test_cswap(base_swap):
blas_func = fblas.cswap
dtype = complex64
except AttributeError:
class test_cswap: pass
class test_zswap(base_swap):
blas_func = fblas.zswap
dtype = complex128
##################################################
### Test blas ?gemv
### This will be a mess to test all cases.
class base_gemv(NumpyTestCase):
def get_data(self,x_stride=1,y_stride=1):
mult = array(1, dtype = self.dtype)
if self.dtype in [complex64, complex128]:
mult = array(1+1j, dtype = self.dtype)
from numpy.random import normal
alpha = array(1., dtype = self.dtype) * mult
beta = array(1.,dtype = self.dtype) * mult
a = normal(0.,1.,(3,3)).astype(self.dtype) * mult
x = arange(shape(a)[0]*x_stride,dtype=self.dtype) * mult
y = arange(shape(a)[1]*y_stride,dtype=self.dtype) * mult
return alpha,beta,a,x,y
def check_simple(self):
alpha,beta,a,x,y = self.get_data()
desired_y = alpha*matrixmultiply(a,x)+beta*y
y = self.blas_func(alpha,a,x,beta,y)
assert_array_almost_equal(desired_y,y)
def check_default_beta_y(self):
alpha,beta,a,x,y = self.get_data()
desired_y = matrixmultiply(a,x)
y = self.blas_func(1,a,x)
assert_array_almost_equal(desired_y,y)
def check_simple_transpose(self):
alpha,beta,a,x,y = self.get_data()
desired_y = alpha*matrixmultiply(transpose(a),x)+beta*y
y = self.blas_func(alpha,a,x,beta,y,trans=1)
assert_array_almost_equal(desired_y,y)
def check_simple_transpose_conj(self):
alpha,beta,a,x,y = self.get_data()
desired_y = alpha*matrixmultiply(transpose(conjugate(a)),x)+beta*y
y = self.blas_func(alpha,a,x,beta,y,trans=2)
assert_array_almost_equal(desired_y,y)
def check_x_stride(self):
alpha,beta,a,x,y = self.get_data(x_stride=2)
desired_y = alpha*matrixmultiply(a,x[::2])+beta*y
y = self.blas_func(alpha,a,x,beta,y,incx=2)
assert_array_almost_equal(desired_y,y)
def check_x_stride_transpose(self):
alpha,beta,a,x,y = self.get_data(x_stride=2)
desired_y = alpha*matrixmultiply(transpose(a),x[::2])+beta*y
y = self.blas_func(alpha,a,x,beta,y,trans=1,incx=2)
assert_array_almost_equal(desired_y,y)
def check_x_stride_assert(self):
# What is the use of this test?
alpha,beta,a,x,y = self.get_data(x_stride=2)
try:
y = self.blas_func(1,a,x,1,y,trans=0,incx=3)
assert(0)
except:
pass
try:
y = self.blas_func(1,a,x,1,y,trans=1,incx=3)
assert(0)
except:
pass
def check_y_stride(self):
alpha,beta,a,x,y = self.get_data(y_stride=2)
desired_y = y.copy()
desired_y[::2] = alpha*matrixmultiply(a,x)+beta*y[::2]
y = self.blas_func(alpha,a,x,beta,y,incy=2)
assert_array_almost_equal(desired_y,y)
def check_y_stride_transpose(self):
alpha,beta,a,x,y = self.get_data(y_stride=2)
desired_y = y.copy()
desired_y[::2] = alpha*matrixmultiply(transpose(a),x)+beta*y[::2]
y = self.blas_func(alpha,a,x,beta,y,trans=1,incy=2)
assert_array_almost_equal(desired_y,y)
def check_y_stride_assert(self):
# What is the use of this test?
alpha,beta,a,x,y = self.get_data(y_stride=2)
try:
y = self.blas_func(1,a,x,1,y,trans=0,incy=3)
assert(0)
except:
pass
try:
y = self.blas_func(1,a,x,1,y,trans=1,incy=3)
assert(0)
except:
pass
try:
class test_sgemv(base_gemv):
blas_func = fblas.sgemv
dtype = float32
except AttributeError:
class test_sgemv: pass
class test_dgemv(base_gemv):
blas_func = fblas.dgemv
dtype = float64
try:
class test_cgemv(base_gemv):
blas_func = fblas.cgemv
dtype = complex64
except AttributeError:
class test_cgemv: pass
class test_zgemv(base_gemv):
blas_func = fblas.zgemv
dtype = complex128
"""
##################################################
### Test blas ?ger
### This will be a mess to test all cases.
class base_ger(NumpyTestCase):
def get_data(self,x_stride=1,y_stride=1):
from numpy.random import normal
alpha = array(1., dtype = self.dtype)
a = normal(0.,1.,(3,3)).astype(self.dtype)
x = arange(shape(a)[0]*x_stride,dtype=self.dtype)
y = arange(shape(a)[1]*y_stride,dtype=self.dtype)
return alpha,a,x,y
def check_simple(self):
alpha,a,x,y = self.get_data()
# tranpose takes care of Fortran vs. C(and Python) memory layout
desired_a = alpha*transpose(x[:,newaxis]*y) + a
self.blas_func(x,y,a)
assert_array_almost_equal(desired_a,a)
def check_x_stride(self):
alpha,a,x,y = self.get_data(x_stride=2)
desired_a = alpha*transpose(x[::2,newaxis]*y) + a
self.blas_func(x,y,a,incx=2)
assert_array_almost_equal(desired_a,a)
def check_x_stride_assert(self):
alpha,a,x,y = self.get_data(x_stride=2)
try:
self.blas_func(x,y,a,incx=3)
assert(0)
except:
pass
def check_y_stride(self):
alpha,a,x,y = self.get_data(y_stride=2)
desired_a = alpha*transpose(x[:,newaxis]*y[::2]) + a
self.blas_func(x,y,a,incy=2)
assert_array_almost_equal(desired_a,a)
def check_y_stride_assert(self):
alpha,a,x,y = self.get_data(y_stride=2)
try:
self.blas_func(a,x,y,incy=3)
assert(0)
except:
pass
class test_sger(base_ger):
blas_func = fblas.sger
dtype = float32
class test_dger(base_ger):
blas_func = fblas.dger
dtype = float64
"""
##################################################
### Test blas ?gerc
### This will be a mess to test all cases.
"""
class base_ger_complex(base_ger):
def get_data(self,x_stride=1,y_stride=1):
from numpy.random import normal
alpha = array(1+1j, dtype = self.dtype)
a = normal(0.,1.,(3,3)).astype(self.dtype)
a = a + normal(0.,1.,(3,3)) * array(1j, dtype = self.dtype)
x = normal(0.,1.,shape(a)[0]*x_stride).astype(self.dtype)
x = x + x * array(1j, dtype = self.dtype)
y = normal(0.,1.,shape(a)[1]*y_stride).astype(self.dtype)
y = y + y * array(1j, dtype = self.dtype)
return alpha,a,x,y
def check_simple(self):
alpha,a,x,y = self.get_data()
# tranpose takes care of Fortran vs. C(and Python) memory layout
a = a * array(0.,dtype = self.dtype)
#desired_a = alpha*transpose(x[:,newaxis]*self.transform(y)) + a
desired_a = alpha*transpose(x[:,newaxis]*y) + a
#self.blas_func(x,y,a,alpha = alpha)
fblas.cgeru(x,y,a,alpha = alpha)
assert_array_almost_equal(desired_a,a)
#def check_x_stride(self):
# alpha,a,x,y = self.get_data(x_stride=2)
# desired_a = alpha*transpose(x[::2,newaxis]*self.transform(y)) + a
# self.blas_func(x,y,a,incx=2)
# assert_array_almost_equal(desired_a,a)
#def check_y_stride(self):
# alpha,a,x,y = self.get_data(y_stride=2)
# desired_a = alpha*transpose(x[:,newaxis]*self.transform(y[::2])) + a
# self.blas_func(x,y,a,incy=2)
# assert_array_almost_equal(desired_a,a)
class test_cgeru(base_ger_complex):
blas_func = fblas.cgeru
dtype = complex64
def transform(self,x):
return x
class test_zgeru(base_ger_complex):
blas_func = fblas.zgeru
dtype = complex128
def transform(self,x):
return x
class test_cgerc(base_ger_complex):
blas_func = fblas.cgerc
dtype = complex64
def transform(self,x):
return conjugate(x)
class test_zgerc(base_ger_complex):
blas_func = fblas.zgerc
dtype = complex128
def transform(self,x):
return conjugate(x)
"""
if __name__ == "__main__":
NumpyTest().run()
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