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""" Test functions for stats module
"""
from numpy.testing import *
set_package_path()
import numpy
from numpy import typecodes, array
import stats
restore_path()
import types
def kolmogorov_test(diststr,args=(),N=20,significance=0.01):
qtest = stats.ksoneisf(significance,N)
cdf = eval('stats.'+diststr+'.cdf')
dist = eval('stats.'+diststr)
# Get random numbers
kwds = {'size':N}
vals = numpy.sort(dist.rvs(*args,**kwds))
cdfvals = cdf(vals,*args)
q = max(abs(cdfvals-arange(1.0,N+1)/N))
assert (q < qtest), "Failed q=%f, bound=%f, alpha=%f" % (q, qtest, significance)
return
# generate test cases to test cdf and distribution consistency
dists = ['uniform','norm','lognorm','expon','beta',
'powerlaw','bradford','burr','fisk','cauchy','halfcauchy',
'foldcauchy','gamma','gengamma','loggamma',
'alpha','anglit','arcsine','betaprime','erlang',
'dgamma','exponweib','exponpow','frechet_l','frechet_r',
'gilbrat','f','ncf','chi2','chi','nakagami','genpareto',
'genextreme','genhalflogistic','pareto','lomax','halfnorm',
'halflogistic','fatiguelife','foldnorm','ncx2','t','nct',
'weibull_min','weibull_max','dweibull','maxwell','rayleigh',
'genlogistic', 'logistic','gumbel_l','gumbel_r','gompertz',
'hypsecant', 'laplace', 'reciprocal','triang','tukeylambda']
for dist in dists:
distfunc = eval('stats.'+dist)
nargs = distfunc.numargs
alpha = 0.01
if dist == 'fatiguelife':
alpha = 0.001
if dist == 'erlang':
args = str((4,)+tuple(rand(2)))
elif dist == 'frechet':
args = str(tuple(2*rand(1))+(0,)+tuple(2*rand(2)))
elif dist == 'triang':
args = str(tuple(rand(nargs)))
elif dist == 'reciprocal':
vals = rand(nargs)
vals[1] = vals[0] + 1.0
args = str(tuple(vals))
else:
args = str(tuple(1.0+rand(nargs)))
exstr = r"""
class test_%s(NumpyTestCase):
def check_cdf(self):
D,pval = stats.kstest('%s','',args=%s,N=30)
if (pval < %f):
D,pval = stats.kstest('%s','',args=%s,N=30)
#if (pval < %f):
# D,pval = stats.kstest('%s','',args=%s,N=30)
assert (pval > %f), "D = " + str(D) + "; pval = " + str(pval) + "; alpha = " + str(alpha) + "\nargs = " + str(%s)
""" % (dist,dist,args,alpha,dist,args,alpha,dist,args,alpha,args)
exec exstr
class test_randint(NumpyTestCase):
def check_rvs(self):
vals = stats.randint.rvs(5,30,size=100)
assert(numpy.all(vals < 30) & numpy.all(vals >= 5))
assert(len(vals) == 100)
vals = stats.randint.rvs(5,30,size=(2,50))
assert(numpy.shape(vals) == (2,50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.randint.rvs(15,46)
assert((val >= 15) & (val < 46))
assert isinstance(val, numpy.ScalarType),`type(val)`
assert(val.dtype.char in typecodes['AllInteger'])
def check_pdf(self):
k = numpy.r_[0:36]
out = numpy.where((k >= 5) & (k < 30), 1.0/(30-5), 0)
vals = stats.randint.pmf(k,5,30)
assert_array_almost_equal(vals,out)
def check_cdf(self):
x = numpy.r_[0:36:100j]
k = numpy.floor(x)
out = numpy.select([k>=30,k>=5],[1.0,(k-5.0+1)/(30-5.0)],0)
vals = stats.randint.cdf(x,5,30)
assert_array_almost_equal(vals, out, decimal=12)
class test_binom(NumpyTestCase):
def check_rvs(self):
vals = stats.binom.rvs(10, 0.75, size=(2, 50))
assert(numpy.all(vals >= 0) & numpy.all(vals <= 10))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.binom.rvs(10, 0.75)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
class test_bernoulli(NumpyTestCase):
def check_rvs(self):
vals = stats.bernoulli.rvs(0.75, size=(2, 50))
assert(numpy.all(vals >= 0) & numpy.all(vals <= 1))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.bernoulli.rvs(0.75)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
class test_nbinom(NumpyTestCase):
def check_rvs(self):
vals = stats.nbinom.rvs(10, 0.75, size=(2, 50))
assert(numpy.all(vals >= 0))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.nbinom.rvs(10, 0.75)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
class test_geom(NumpyTestCase):
def check_rvs(self):
vals = stats.geom.rvs(0.75, size=(2, 50))
assert(numpy.all(vals >= 0))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.geom.rvs(0.75)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
def check_pmf(self):
vals = stats.geom.pmf([1,2,3],0.5)
assert_array_almost_equal(vals,[0.5,0.25,0.125])
def check_cdf_sf(self):
vals = stats.geom.cdf([1,2,3],0.5)
vals_sf = stats.geom.sf([1,2,3],0.5)
expected = array([0.5,0.75,0.875])
assert_array_almost_equal(vals,expected)
assert_array_almost_equal(vals_sf,1-expected)
class test_hypergeom(NumpyTestCase):
def check_rvs(self):
vals = stats.hypergeom.rvs(20, 10, 3, size=(2, 50))
assert(numpy.all(vals >= 0) &
numpy.all(vals <= 3))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.hypergeom.rvs(20, 3, 10)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
class test_logser(NumpyTestCase):
def check_rvs(self):
vals = stats.logser.rvs(0.75, size=(2, 50))
assert(numpy.all(vals >= 1))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.logser.rvs(0.75)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
class test_poisson(NumpyTestCase):
def check_rvs(self):
vals = stats.poisson.rvs(0.5, size=(2, 50))
assert(numpy.all(vals >= 0))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.poisson.rvs(0.5)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
class test_zipf(NumpyTestCase):
def check_rvs(self):
vals = stats.zipf.rvs(1.5, size=(2, 50))
assert(numpy.all(vals >= 1))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.zipf.rvs(1.5)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
class test_dlaplace(NumpyTestCase):
def check_rvs(self):
vals = stats.dlaplace.rvs(1.5 , size=(2, 50))
assert(numpy.shape(vals) == (2, 50))
assert(vals.dtype.char in typecodes['AllInteger'])
val = stats.dlaplace.rvs(1.5)
assert(isinstance(val, numpy.ndarray))
assert(val.dtype.char in typecodes['AllInteger'])
class test_rv_discrete(NumpyTestCase):
def check_rvs(self):
states = [-1,0,1,2,3,4]
probability = [0.0,0.3,0.4,0.0,0.3,0.0]
samples = 1000
r = stats.rv_discrete(name='sample',values=(states,probability))
x = r.rvs(size=samples)
for s,p in zip(states,probability):
assert abs(sum(x == s)/float(samples) - p) < 0.05
class test_expon(NumpyTestCase):
def check_zero(self):
assert_equal(stats.expon.pdf(0),1)
if __name__ == "__main__":
NumpyTest('stats.distributions').run()
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