1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
|
from __future__ import absolute_import
from . import test_fasta
import os
import screed
from screed.DBConstants import fileExtension
from . import screed_tst_utils as utils
import shutil
class test_fa_recover(test_fasta.Test_fasta):
def setup_method(self):
self._fileName = utils.get_temp_filename('fastaRecovery')
self._testfa = utils.get_temp_filename('test.fa')
shutil.copy(utils.get_test_data('test.fa'), self._testfa)
screed.read_fasta_sequences(self._testfa)
screed.ToFasta(self._testfa, self._fileName)
screed.read_fasta_sequences(self._fileName)
self.db = screed.ScreedDB(self._fileName)
def teardown_method(self):
os.unlink(self._fileName)
os.unlink(self._fileName + fileExtension)
os.unlink(self._testfa + fileExtension)
|
