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from __future__ import absolute_import
from . import test_fastq
import os
import screed
from screed.DBConstants import fileExtension
from . import screed_tst_utils as utils
import shutil
class test_fq_recover(test_fastq.Test_fastq):
def setup_method(self):
self._fileName = utils.get_temp_filename('fastqRecovery')
self._testfq = utils.get_temp_filename('test.fastq')
shutil.copy(utils.get_test_data('test.fastq'), self._testfq)
screed.read_fastq_sequences(self._testfq)
screed.ToFastq(self._testfq, self._fileName)
screed.read_fastq_sequences(self._fileName)
self.db = screed.ScreedDB(self._fileName)
def teardown_method(self):
os.unlink(self._fileName)
os.unlink(self._fileName + fileExtension)
os.unlink(self._testfq + fileExtension)
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