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from __future__ import absolute_import
import screed
import screed.seqparse
from screed.DBConstants import fileExtension
import os
from . import screed_tst_utils as utils
import shutil
testha = utils.get_temp_filename('test.hava')
shutil.copy(utils.get_test_data('test.hava'), testha)
class test_hava(object):
def setup_method(self):
screed.seqparse.read_hava_sequences(testha)
self._db = screed.ScreedDB(testha)
def teardown_method(self):
b = 7
# os.unlink(testha + fileExtension)
def test_contains(self):
assert 'test_006' in self._db
def test_beginning_key_retrieval(self):
result = self._db['test_000']
assert result.hava == 'test_000'
assert result.quarzk == 'ACGGTGACGGTCACCGTCGACGGCCCAAGCCCATCGAACG'\
'TACCACCCCCACCTATCGTCACGCTGGTGGAGAGCCAATG'
assert result.muchalo == 'AFPPCLHBCCILGMMOCHKNNDBKCCPNHAMKJOCCDJA'\
'OEPNMHFHCBAJOKEMMMBHCPHIOAEPFFCAOJPGIMKGK'
assert result.fakours == '218583165871861127719451483455294521865'\
'68176931571171542294878855181415261425688'
assert result.selimizicka == 'bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb'\
'bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb'
assert result.marshoon == 'C7AF246AC7AAEABE5A557FCBC6FD5F5263BCDE'\
'4E745BEF1GG7DD1AB511GBC63A4GF1F4E1A154B35D'
def test_middle_key_retrieval(self):
result = self._db['test_0063']
assert result.hava == 'test_0063'
assert result.quarzk == 'CAACACGATCAAGTTTGGTAAGAATTCCGCCTTAAGCTTT'\
'CTAGAACGATAGTTGCCCCCAATCTGGTTCGAAATCTCTT'
assert result.muchalo == 'GMDAPLMOOFANDHHMLBPIKGHIAFFFOABFMNNJNIJ'\
'ILEEFEPOCAJLNDLIFBPMGKOFJIEFAHNJPIOFAJMLM'
assert result.fakours == '392363971393898522756138876485334274384'\
'39122136418369146118333919885587613673488'
assert result.selimizicka == 'bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb'\
'bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb'
assert result.marshoon == 'FC25E2CFC2BAFA7A2AA4757F3GFFFEE37G7752'\
'FCDBAEADBA1AC7374FB5C15552E6E2GG6GFF62C6GE'
def test_end_key_retrieval(self):
result = self._db['test_00124']
assert result.hava == 'test_00124'
assert result.quarzk == 'ATCGCAACCGTTTCCCCTATCTGGCAATTGAATCCGCGTC'\
'CTAAAACGAAAGCTTATCCCTGGCGAGGCACGCTAGGCCT'
assert result.muchalo == 'CIHNCECANFNLKGCHNOEHJDHADHPAEMMNKGMMMPD'\
'OBMOCKNBCMCPHEBEOINHMBMMGCHEMOIOAPEFPDDJP'
assert result.fakours == '327364511483537131695325595876269716778'\
'14946924334424648676283848861393812686731'
assert result.selimizicka == 'bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb'\
'bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb'
assert result.marshoon == '4FE5FDD76CC5DE4DC2F25AA2GFBD7BEG326C6D'\
'7AB5B71GA67BAFD63AE1A562CDC1C2D157G6EF17CD'
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