File: mystats.py

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python-seqcluster 1.2.7%2Bds-1
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try:
    import scipy.stats as stat
except:
    pass

def up_threshold(x, s, p):
    """function to decide if similarity is
    below cutoff"""
    if 1.0 * x/s >= p:
        return True
    elif stat.binom_test(x, s, p) > 0.01:
        return True
    return False