File: ann_reduced.gtf

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python-seqcluster 1.2.9%2Bds-7
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file content (21 lines) | stat: -rw-r--r-- 4,136 bytes parent folder | download | duplicates (5)
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1_41222971_41223032	flaimapper	miRNA	1	59	1	+	0	ncrnadb09_id "HGNC 31626; HUGO-Symbol MIR30C1; gene_name microRNA_30c-1; LOCI [chr1:41222946-41223054:strand +]; SOURCE RefSeq; gene_name NR_029833; GENOME hg19"
1_149298575_149298628	flaimapper	tRNA	1	51	1	-	0	ncrnadb09_id "NAME TRNAValCAC; LOCI [chr1:149298555-149298627:strand -]; SOURCE UCSC; gene_name chr1.tRNA98-ValCAC; GENOME hg19"
1_149684088_149684162	flaimapper	tRNA	1	72	1	-	0	ncrnadb09_id "NAME TRNAValCAC; LOCI [chr1:149684088-149684161:strand -]; SOURCE UCSC; gene_name chr1.tRNA90-ValCAC; GENOME hg19"
1_180184320_180184348	flaimapper	tRNA	1	26	1	-	0	ncrnadb09_id "NAME TRNAValAAC; LOCI [chr1:180184276-180184348:strand -]; SOURCE UCSC; gene_name chr1.tRNA63-ValAAC; GENOME hg19"
3_169490016_169490091	flaimapper	tRNA	1	73	1	+	0	ncrnadb09_id "NAME TRNAValAAC; LOCI [chr3:169490018-169490090:strand +; chr5:180596610-180596682:strand +; chr5:180591154-180591226:strand +; chr6:27721179-27721251:strand -; chr5:180645270-180645342:strand -]; SOURCE UCSC; gene_name chr3.tRNA2-ValAAC; GENOME hg19"
5_180615415_180615488	flaimapper	tRNA	1	71	1	-	0	ncrnadb09_id "NAME TRNAValAAC; LOCI [chr5:180615416-180615488:strand -]; SOURCE UCSC; gene_name chr5.tRNA15-ValAAC; GENOME hg19"
5_180649393_180649468	flaimapper	tRNA	1	73	1	-	0	ncrnadb09_id "NAME TRNAValCAC; LOCI [chr5:180649395-180649467:strand -; chr5:180529253-180529325:strand -; chr6:26538282-26538354:strand +; chr1:161369490-161369562:strand -; chr5:180524070-180524142:strand +; chr5:180600650-180600722:strand +]; SOURCE UCSC; gene_name chr5.tRNA2-ValCAC; GENOME hg19"
6_27173887_27173939	flaimapper	tRNA	1	50	1	-	0	ncrnadb09_id "NAME TRNAValCAC; LOCI [chr6:27173867-27173939:strand -]; SOURCE UCSC; gene_name chr6.tRNA157-ValCAC; GENOME hg19"
6_27203286_27203353	flaimapper	tRNA	1	65	1	+	0	ncrnadb09_id "NAME TRNAValAAC; LOCI [chr6:27203288-27203360:strand +]; SOURCE UCSC; gene_name chr6.tRNA37-ValAAC; GENOME hg19"
6_27248048_27248121	flaimapper	tRNA	1	71	1	-	0	ncrnadb09_id "NAME TRNAValCAC; LOCI [chr6:27248049-27248121:strand -]; SOURCE UCSC; gene_name chr6.tRNA152-ValCAC; GENOME hg19"
6_27258404_27258438	flaimapper	tRNA	1	32	1	+	0	ncrnadb09_id "NAME TRNAValTAC; LOCI [chr6:27258405-27258477:strand +]; SOURCE UCSC; gene_name chr6.tRNA40-ValTAC; GENOME hg19"
6_27618739_27618779	flaimapper	tRNA	1	38	1	-	0	ncrnadb09_id "NAME TRNAValAAC; LOCI [chr6:27618707-27618779:strand -]; SOURCE UCSC; gene_name chr6.tRNA139-ValAAC; GENOME hg19"
6_27648885_27648957	flaimapper	tRNA	1	70	1	-	0	ncrnadb09_id "NAME TRNAValAAC; LOCI [chr6:27648885-27648957:strand -]; SOURCE UCSC; gene_name chr6.tRNA136-ValAAC; GENOME hg19"
6_27696365_27696399	flaimapper	tRNA	1	32	1	-	0	ncrnadb09_id "NAME TRNAValCAC; LOCI [chr6:27696327-27696399:strand -]; SOURCE UCSC; gene_name chr6.tRNA133-ValCAC; GENOME hg19"
6_72086665_72086729	flaimapper	miRNA	1	62	1	-	0	ncrnadb09_id "HGNC 31627; HUGO-Symbol MIR30C2; gene_name microRNA_30c-2; LOCI [chr6:72086653-72086744:strand -]; SOURCE RefSeq; gene_name NR_029598; GENOME hg19"
8_135812815_135812834	flaimapper	miRNA	1	17	1	-	0	ncrnadb09_id "HGNC 31625; HUGO-Symbol MIR30B; gene_name microRNA_30b; LOCI [chr8:135812753-135812860:strand -]; SOURCE RefSeq; gene_name NR_029666; GENOME hg19"
10_5895690_5895746	flaimapper	tRNA	1	54	1	-	0	ncrnadb09_id "NAME TRNAValTAC; LOCI [chr10:5895674-5895746:strand -]; SOURCE UCSC; gene_name chr10.tRNA6-ValTAC; GENOME hg19"
11_59318458_59318516	flaimapper	tRNA	1	56	1	-	0	ncrnadb09_id "NAME TRNAValTAC; LOCI [chr11:59318460-59318532:strand -]; SOURCE UCSC; gene_name chr11.tRNA16-ValTAC; GENOME hg19"
19_4724667_4724719	flaimapper	tRNA	1	50	1	-	0	ncrnadb09_id "NAME TRNAValCAC; LOCI [chr19:4724647-4724719:strand -]; SOURCE UCSC; gene_name chr19.tRNA13-ValCAC; GENOME hg19"
20_43951000_43951033	flaimapper	tRNA	1	31	1	+	0	ncrnadb09_id "NAME TRNAValCAC; LOCI [chr20:43951001-43951073:strand +]; SOURCE UCSC; gene_name chr20.tRNA3-ValCAC; GENOME hg19"
X_18693007_18693101	flaimapper	tRNA	1	92	1	-	0	ncrnadb09_id "NAME TRNAValTAC; LOCI [chrX:18693029-18693101:strand -; chr11:59318102-59318174:strand -]; SOURCE UCSC; gene_name chrX.tRNA4-ValTAC; GENOME hg19"