File: genome.fa.fai

package info (click to toggle)
python-seqcluster 1.2.9%2Bds-7
  • links: PTS, VCS
  • area: contrib
  • in suites: forky, sid
  • size: 113,648 kB
  • sloc: python: 5,308; makefile: 175; sh: 122; javascript: 55
file content (371 lines) | stat: -rw-r--r-- 13,268 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
1_41222971_41223032	61	21	61	62
1_48087402_48087423	21	104	21	22
1_52439082_52439117	35	147	35	36
1_65154802_65154830	28	204	28	29
1_68041953_68041969	16	254	16	17
1_72642647_72642675	28	292	28	29
1_74215239_74215271	32	342	32	33
1_74272630_74272666	36	396	36	37
1_75313345_75313361	16	454	16	17
1_78560518_78560546	28	492	28	29
1_80365643_80365658	15	542	15	16
1_92676576_92676591	15	579	15	16
1_97018451_97018478	27	616	27	28
1_108413719_108413733	14	667	14	15
1_117575797_117575816	19	705	19	20
1_149298575_149298628	53	748	53	54
1_149684088_149684162	74	825	74	75
1_161369489_161369563	74	923	74	75
1_166975297_166975318	21	1021	21	22
1_180184320_180184348	28	1066	28	29
1_182913550_182913589	39	1118	39	40
1_186341790_186341821	31	1181	31	32
1_204531539_204531604	65	1236	65	66
1_225304958_225304986	28	1325	28	29
1_227746050_227746074	24	1377	24	25
1_227748881_227749005	124	1425	124	125
1_228743548_228743580	32	1573	32	33
1_228746006_228746133	127	1629	127	128
1_228748247_228748374	127	1780	127	128
1_228750488_228750615	127	1931	127	128
1_228752729_228752856	127	2082	127	128
1_228754970_228755097	127	2233	127	128
1_228757185_228757312	127	2384	127	128
1_228759405_228759532	127	2535	127	128
1_228761647_228761774	127	2686	127	128
1_228763886_228764013	127	2837	127	128
1_228766128_228766255	127	2988	127	128
1_228768369_228768496	127	3139	127	128
1_228770609_228770736	127	3290	127	128
1_228772834_228772961	127	3441	127	128
1_228775075_228775202	127	3592	127	128
1_228777306_228777433	127	3743	127	128
1_228779547_228779674	127	3894	127	128
1_228781778_228781905	127	4045	127	128
1_232768928_232768943	15	4196	15	16
1_234912589_234912605	16	4235	16	17
2_9620276_9620290	14	4271	14	15
2_11657584_11657603	19	4307	19	20
2_11701786_11701812	26	4348	26	27
2_18991651_18991667	16	4396	16	17
2_20601457_20601485	28	4434	28	29
2_22561756_22561783	27	4484	27	28
2_23307834_23307850	16	4533	16	17
2_26669341_26669358	17	4571	17	18
2_32183415_32183430	15	4610	15	16
2_47507894_47507932	38	4647	38	39
2_47881833_47881848	15	4707	15	16
2_59496123_59496144	21	4744	21	22
2_59549321_59549393	72	4787	72	73
2_73089948_73089961	13	4881	13	14
2_81723388_81723420	32	4916	32	33
2_86564516_86564531	15	4970	15	16
2_115695363_115695382	19	5009	19	20
2_127129309_127129324	15	5052	15	16
2_162669984_162670001	17	5091	17	18
2_169127418_169127433	15	5132	15	16
2_170568551_170568566	15	5171	15	16
2_171278465_171278481	16	5210	16	17
2_176684081_176684099	18	5250	18	19
2_185612450_185612466	16	5292	16	17
2_200185317_200185338	21	5332	21	22
3_12196530_12196571	41	5375	41	42
3_13806303_13806322	19	5438	19	20
3_14436235_14436259	24	5479	24	25
3_29899254_29899290	36	5525	36	37
3_48642132_48642150	18	5583	18	19
3_51728477_51728503	26	5623	26	27
3_61684877_61684912	35	5671	35	36
3_72794947_72794976	29	5728	29	30
3_81795769_81795784	15	5779	15	16
3_125058716_125058742	26	5818	26	27
3_127844988_127845005	17	5868	17	18
3_134502335_134502397	62	5909	62	63
3_142099332_142099358	26	5995	26	27
3_149225568_149225589	21	6045	21	22
3_150905885_150905964	79	6090	79	80
3_152916213_152916229	16	6193	16	17
3_155093810_155093838	28	6233	28	29
3_160683084_160683100	16	6285	16	17
3_162464368_162464384	16	6325	16	17
3_169490016_169490091	75	6365	75	76
3_175584517_175584531	14	6464	14	15
3_179879686_179879765	79	6502	79	80
3_181540661_181540778	117	6605	117	118
3_189598992_189599007	15	6746	15	16
4_8394810_8394834	24	6781	24	25
4_22934562_22934578	16	6827	16	17
4_28160158_28160175	17	6865	17	18
4_56963581_56963645	64	6904	64	65
4_79822301_79822318	17	6990	17	18
4_83459137_83459157	20	7029	20	21
4_86420245_86420260	15	7071	15	16
4_86789518_86789539	21	7108	21	22
4_97991974_97991999	25	7151	25	26
4_106679390_106679406	16	7200	16	17
4_108569301_108569319	18	7240	18	19
4_131427821_131427841	20	7282	20	21
4_178378292_178378327	35	7326	35	36
4_185419802_185419819	17	7385	17	18
5_18789240_18789257	17	7424	17	18
5_30228993_30229021	28	7463	28	29
5_33277981_33278009	28	7513	28	29
5_33556617_33556632	15	7563	15	16
5_34802409_34802473	64	7600	64	65
5_54437397_54437412	15	7686	15	16
5_101466819_101466845	26	7725	26	27
5_103105117_103105133	16	7775	16	17
5_112146426_112146441	15	7815	15	16
5_116153783_116153826	43	7854	43	44
5_118408212_118408229	17	7921	17	18
5_129450114_129450185	71	7962	71	72
5_138348087_138348109	22	8057	22	23
5_155272446_155272516	70	8103	70	71
5_159974329_159974349	20	8197	20	21
5_162571742_162571757	15	8241	15	16
5_170716930_170716947	17	8280	17	18
5_172643285_172643310	25	8321	25	26
5_180524068_180524142	74	8370	74	75
5_180529252_180529326	74	8468	74	75
5_180591152_180591226	74	8566	74	75
5_180596608_180596682	74	8664	74	75
5_180600648_180600724	76	8762	76	77
5_180615415_180615488	73	8862	73	74
5_180645269_180645342	73	8959	73	74
5_180649393_180649468	75	9056	75	76
6_3080072_3080101	29	9151	29	30
6_4428196_4428317	121	9200	121	122
6_17722015_17722043	28	9343	28	29
6_18879765_18879782	17	9393	17	18
6_26538280_26538355	75	9432	75	76
6_27173887_27173939	52	9529	52	53
6_27203286_27203353	67	9603	67	68
6_27248048_27248121	73	9692	73	74
6_27258404_27258438	34	9787	34	35
6_27618739_27618779	40	9843	40	41
6_27648405_27648433	28	9905	28	29
6_27648885_27648957	72	9955	72	73
6_27696365_27696399	34	10049	34	35
6_27721178_27721252	74	10105	74	75
6_27740108_27740132	24	10201	24	25
6_67679401_67679417	16	10247	16	17
6_72086665_72086729	64	10285	64	65
6_97360391_97360407	16	10371	16	17
6_100269162_100269177	15	10411	15	16
6_110074368_110074432	64	10450	64	65
6_116499409_116499444	35	10538	35	36
6_126301030_126301080	50	10597	50	51
6_126448904_126448925	21	10671	21	22
6_129093911_129093928	17	10716	17	18
6_134578257_134578282	25	10757	25	26
6_143296745_143296761	16	10806	16	17
6_151002339_151002355	16	10846	16	17
6_152611109_152611137	28	10886	28	29
6_152731480_152731502	22	10938	22	23
6_153741608_153741651	43	10984	43	44
6_162473083_162473108	25	11051	25	26
6_165823057_165823140	83	11100	83	84
7_2624551_2624584	33	11203	33	34
7_28396159_28396177	18	11258	18	19
7_74011128_74011163	35	11298	35	36
7_77547258_77547276	18	11355	18	19
7_126159707_126159732	25	11397	25	26
7_128337505_128337612	107	11446	107	108
7_128337749_128337798	49	11577	49	50
7_128444746_128444766	20	11650	20	21
7_129667116_129667144	28	11694	28	29
7_132283726_132283742	16	11746	16	17
7_134660549_134660582	33	11786	33	34
7_140086578_140086607	29	11843	29	30
7_141107342_141107368	26	11896	26	27
7_158707438_158707459	21	11946	21	22
8_2204749_2204766	17	11987	17	18
8_10544145_10544172	27	12026	27	28
8_13393537_13393562	25	12075	25	26
8_20147725_20147754	29	12122	29	30
8_28387964_28388006	42	12173	42	43
8_33499463_33499479	16	12237	16	17
8_35636155_35636169	14	12275	14	15
8_35764554_35764569	15	12311	15	16
8_60368457_60368489	32	12348	32	33
8_61156161_61156203	42	12402	42	43
8_91523443_91523469	26	12466	26	27
8_93179688_93179772	84	12514	84	85
8_108039360_108039375	15	12622	15	16
8_109723215_109723230	15	12661	15	16
8_111907142_111907157	15	12700	15	16
8_119539228_119539246	18	12739	18	19
8_122114334_122114350	16	12781	16	17
8_135812815_135812834	19	12821	19	20
8_139815642_139815695	53	12864	53	54
8_141873117_141873133	16	12941	16	17
9_9632269_9632289	20	12977	20	21
9_36857825_36857842	17	13019	17	18
9_66458231_66458251	20	13058	20	21
9_76365914_76365943	29	13100	29	30
9_90063913_90063929	16	13151	16	17
9_95168761_95168777	16	13189	16	17
9_104328710_104328743	33	13229	33	34
9_111165845_111165865	20	13286	20	21
9_115014592_115014627	35	13330	35	36
10_327975_328065	90	13384	90	91
10_672175_672189	14	13493	14	15
10_5895690_5895746	56	13528	56	57
10_5942291_5942322	31	13605	31	32
10_19922610_19922638	28	13659	28	29
10_26102760_26102779	19	13710	19	20
10_50387904_50387927	23	13752	23	24
10_55654121_55654145	24	13798	24	25
10_67030893_67030908	15	13845	15	16
10_70877248_70877266	18	13883	18	19
10_87812297_87812325	28	13924	28	29
10_91369106_91369120	14	13975	14	15
10_95270408_95270437	29	14012	29	30
10_95952619_95952645	26	14064	26	27
10_108729812_108729831	19	14115	19	20
10_117403602_117403619	17	14159	17	18
10_123281089_123281112	23	14201	23	24
10_127208455_127208470	15	14249	15	16
11_8739141_8739166	25	14285	25	26
11_19423438_19423473	35	14333	35	36
11_21022425_21022475	50	14391	50	51
11_22709930_22709949	19	14464	19	20
11_28346826_28346841	15	14506	15	16
11_44784466_44784504	38	14544	38	39
11_49312721_49312737	16	14605	16	17
11_59318101_59318174	73	14644	73	74
11_59318458_59318516	58	14740	58	59
11_71193837_71193859	22	14821	22	23
11_95232825_95232841	16	14866	16	17
11_108290588_108290603	15	14907	15	16
11_109283607_109283632	25	14947	25	26
11_110910906_110910932	26	14997	26	27
11_124506391_124506444	53	15048	53	54
11_125023195_125023219	24	15126	24	25
12_13199085_13199175	90	15173	90	91
12_17919500_17919514	14	15286	14	15
12_28658326_28658382	56	15323	56	57
12_28971820_28971835	15	15402	15	16
12_30846809_30846834	25	15440	25	26
12_34356838_34356857	19	15488	19	20
12_34358727_34358755	28	15530	28	29
12_38555264_38555302	38	15581	38	39
12_61936982_61937004	22	15642	22	23
12_66799903_66799919	16	15687	16	17
12_71892271_71892290	19	15726	19	20
12_89012669_89012688	19	15768	19	20
12_99477625_99477657	32	15810	32	33
12_102173591_102173617	26	15867	26	27
12_104519013_104519103	90	15918	90	91
12_105198645_105198664	19	16033	19	20
12_110986817_110986834	17	16077	17	18
12_121198590_121198605	15	16119	15	16
12_131784232_131784260	28	16159	28	29
12_132145643_132145671	28	16212	28	29
12_132285887_132285916	29	16265	29	30
12_133624135_133624172	37	16319	37	38
13_21920154_21920182	28	16379	28	29
13_30980376_30980391	15	16430	15	16
13_58565494_58565513	19	16468	19	20
13_69387157_69387172	15	16510	15	16
13_70982604_70982619	15	16548	15	16
13_85679058_85679075	17	16586	17	18
14_20883156_20883182	26	16626	26	27
14_56973136_56973160	24	16675	24	25
14_68123847_68123869	22	16722	22	23
14_69570351_69570379	28	16767	28	29
14_76070554_76070605	51	16818	51	52
14_76529559_76529589	30	16892	30	31
14_76693874_76693890	16	16945	16	17
14_77870247_77870282	35	16984	35	36
14_78644200_78644230	30	17042	30	31
14_90894659_90894673	14	17095	14	15
14_92630849_92630868	19	17132	19	20
14_94883072_94883100	28	17174	28	29
14_99531803_99531818	15	17225	15	16
14_103783283_103783318	35	17265	35	36
14_104401618_104401637	19	17325	19	20
14_105590094_105590122	28	17369	28	29
14_107092676_107092766	90	17422	90	91
15_24942471_24942486	15	17535	15	16
15_40623824_40623849	25	17573	25	26
15_44218570_44218598	28	17621	28	29
15_50755596_50755613	17	17672	17	18
15_86681524_86681552	28	17712	28	29
15_93963509_93963538	29	17763	29	30
16_4864565_4864579	14	17813	14	15
16_14929245_14929273	28	17850	28	29
16_47484342_47484361	19	17901	19	20
16_50903363_50903388	25	17943	25	26
16_59765258_59765347	89	17991	89	90
16_66335766_66335801	35	18103	35	36
16_68776381_68776458	77	18161	77	78
16_74607783_74607797	14	18261	14	15
16_76097123_76097138	15	18298	15	16
17_2092245_2092278	33	18334	33	34
17_8744443_8744462	19	18388	19	20
17_9491435_9491450	15	18428	15	16
17_36888052_36888077	25	18466	25	26
17_39874405_39874440	35	18514	35	36
17_41530795_41530810	15	18572	15	16
17_43635032_43635051	19	18610	19	20
17_62900695_62900714	19	18652	19	20
17_64263914_64263949	35	18694	35	36
17_65822072_65822093	21	18752	21	22
17_70071167_70071183	16	18796	16	17
18_8354232_8354250	18	18833	18	19
18_9923926_9923968	42	18872	42	43
18_20771776_20771791	15	18937	15	16
18_21750466_21750500	34	18975	34	35
18_57835954_57835971	17	19032	17	18
18_68181215_68181230	15	19072	15	16
19_4724667_4724719	52	19108	52	53
19_5352672_5352686	14	19181	14	15
19_7951860_7951910	50	19216	50	51
19_21295931_21296011	80	19289	80	81
19_32734868_32734891	23	19392	23	24
19_54485793_54485813	20	19438	20	21
19_58378660_58378704	44	19481	44	45
20_3048546_3048568	22	19546	22	23
20_6029746_6029761	15	19589	15	16
20_9197571_9197599	28	19625	28	29
20_19495656_19495672	16	19676	16	17
20_30596178_30596240	62	19715	62	63
20_30638459_30638481	22	19800	22	23
20_41270012_41270029	17	19845	17	18
20_43951000_43951033	33	19885	33	34
20_46501971_46501993	22	19941	22	23
20_49329332_49329348	16	19986	16	17
20_52040722_52040738	16	20025	16	17
20_53710960_53710975	15	20064	15	16
20_57002039_57002393	354	20102	354	355
20_57002857_57003099	242	20479	242	243
21_42499012_42499026	14	20744	14	15
22_24253654_24253684	30	20781	30	31
22_25149146_25149162	16	20834	16	17
22_39043646_39043662	16	20873	16	17
22_48751985_48752005	20	20912	20	21
X_10253784_10253821	37	20954	37	38
X_12176379_12176394	15	21013	15	16
X_18693007_18693101	94	21050	94	95
X_29000964_29000995	31	21166	31	32
X_41152087_41152140	53	21219	53	54
X_42966962_42966978	16	21294	16	17
X_45571706_45571720	14	21332	14	15
X_45727927_45727945	18	21368	18	19
X_53119742_53119759	17	21408	17	18
X_57612705_57612729	24	21447	24	25
X_68892368_68892443	75	21493	75	76
X_69945684_69945698	14	21590	14	15
X_71941011_71941028	17	21626	17	18
X_80798444_80798466	22	21665	22	23
X_84565079_84565098	19	21709	19	20
X_116134859_116134882	23	21752	23	24
X_128896294_128896320	26	21799	26	27
X_131072902_131072939	37	21849	37	38
Y_9113467_9113482	15	21906	15	16
Y_19671737_19671770	33	21943	33	34
Y_20508007_20508040	33	21998	33	34
GL000220.1_116564_116589	25	22058	25	26
GL000220.1_160536_160561	25	22110	25	26
GL000223.1_58492_58529	37	22160	37	38