1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470
|
# Copyright (c) DataLab Platform Developers, BSD 3-Clause license, see LICENSE file.
"""
Unit tests for convenience I/O functions with SaveToDirectoryParam.
This module tests the `write_signals` and `write_images` functions from
`sigima.io.convenience`, showcasing the usage of `SaveToDirectoryParam`
for saving multiple objects to a directory with various configuration options.
"""
# pylint: disable=invalid-name # Allows short reference names like x, y, ...
# pylint: disable=duplicate-code
from __future__ import annotations
import os
import os.path as osp
import numpy as np
from sigima.io import ImageIORegistry, SignalIORegistry, write_images, write_signals
from sigima.objects import create_image, create_signal
from sigima.params import SaveToDirectoryParam
from sigima.tests.env import execenv
from sigima.tests.helpers import WorkdirRestoringTempDir
def create_test_signals() -> list:
"""Create a list of test signals for testing."""
signals = []
# Create signals with different titles and properties
x = np.linspace(0, 10, 100)
# Signal 1: Sine wave
y1 = np.sin(x)
signal1 = create_signal(
title="Sine Wave",
x=x,
y=y1,
metadata={"type": "sine", "frequency": "1 Hz"},
units=("s", "V"),
)
signals.append(signal1)
# Signal 2: Cosine wave
y2 = np.cos(x * 2)
signal2 = create_signal(
title="Cosine Wave",
x=x,
y=y2,
metadata={"type": "cosine", "frequency": "2 Hz"},
units=("s", "A"),
)
signals.append(signal2)
# Signal 3: Exponential decay
y3 = np.exp(-x / 3)
signal3 = create_signal(
title="Exponential Decay",
x=x,
y=y3,
metadata={"type": "exponential", "time_constant": "3 s"},
units=("s", "V"),
)
signals.append(signal3)
return signals
def create_test_images() -> list:
"""Create a list of test images for testing."""
images = []
# Create images with different properties
# Image 1: Random noise
data1 = np.random.rand(50, 50)
image1 = create_image(
title="Random Noise",
data=data1,
metadata={"type": "noise", "distribution": "uniform"},
units=("px", "px", "intensity"),
)
images.append(image1)
# Image 2: Gaussian pattern
x, y = np.meshgrid(np.linspace(-5, 5, 50), np.linspace(-5, 5, 50))
data2 = np.exp(-(x**2 + y**2) / 2)
image2 = create_image(
title="Gaussian Pattern",
data=data2,
metadata={"type": "gaussian", "sigma": "1.0"},
units=("mm", "mm", "intensity"),
)
images.append(image2)
# Image 3: Checkerboard pattern
data3 = np.zeros((50, 50))
data3[::10, ::10] = 1
data3[5::10, 5::10] = 1
image3 = create_image(
title="Checkerboard",
data=data3,
metadata={"type": "pattern", "period": "10 px"},
units=("px", "px", "binary"),
)
images.append(image3)
return images
def test_write_signals_basic() -> None:
"""Test basic functionality of write_signals with SaveToDirectoryParam."""
execenv.print(f"{test_write_signals_basic.__doc__}:")
with WorkdirRestoringTempDir() as tmpdir:
# Create test signals
signals = create_test_signals()
execenv.print(f" Created {len(signals)} test signals")
# Configure SaveToDirectoryParam
param = SaveToDirectoryParam()
param.directory = tmpdir
param.basename = "{title}"
param.extension = ".h5sig"
param.overwrite = False
# Write signals to directory
write_signals(param, signals)
execenv.print(f" Wrote signals to {tmpdir}")
# Verify files were created
expected_files = [
"Sine Wave.h5sig",
"Cosine Wave.h5sig",
"Exponential Decay.h5sig",
]
for expected_file in expected_files:
filepath = osp.join(tmpdir, expected_file)
assert osp.exists(filepath), f"Expected file {expected_file} not found"
execenv.print(f" ✓ Created: {expected_file}")
# Verify we can read the signal back
loaded_signal = SignalIORegistry.read(filepath)[0]
assert loaded_signal is not None
execenv.print(f" ✓ Verified: {expected_file}")
execenv.print(f"{test_write_signals_basic.__doc__}: OK")
def test_write_images_basic() -> None:
"""Test basic functionality of write_images with SaveToDirectoryParam."""
execenv.print(f"{test_write_images_basic.__doc__}:")
with WorkdirRestoringTempDir() as tmpdir:
# Create test images
images = create_test_images()
execenv.print(f" Created {len(images)} test images")
# Configure SaveToDirectoryParam
param = SaveToDirectoryParam()
param.directory = tmpdir
param.basename = "{title}"
param.extension = ".h5ima"
param.overwrite = False
# Write images to directory
write_images(param, images)
execenv.print(f" Wrote images to {tmpdir}")
# Verify files were created
expected_files = [
"Random Noise.h5ima",
"Gaussian Pattern.h5ima",
"Checkerboard.h5ima",
]
for expected_file in expected_files:
filepath = osp.join(tmpdir, expected_file)
assert osp.exists(filepath), f"Expected file {expected_file} not found"
execenv.print(f" ✓ Created: {expected_file}")
# Verify we can read the image back
loaded_image = ImageIORegistry.read(filepath)[0]
assert loaded_image is not None
execenv.print(f" ✓ Verified: {expected_file}")
execenv.print(f"{test_write_images_basic.__doc__}: OK")
def test_savetodir_param_formatting() -> None:
"""Test SaveToDirectoryParam formatting options and basename patterns."""
execenv.print(f"{test_savetodir_param_formatting.__doc__}:")
with WorkdirRestoringTempDir() as tmpdir:
# Create test signals with specific metadata
signals = create_test_signals()
# Test different basename patterns
test_cases = [
("{title}", ["Sine Wave.csv", "Cosine Wave.csv", "Exponential Decay.csv"]),
(
"{index:03d}_{title}",
[
"001_Sine Wave.csv",
"002_Cosine Wave.csv",
"003_Exponential Decay.csv",
],
),
(
"signal_{count}_{index}",
["signal_3_1.csv", "signal_3_2.csv", "signal_3_3.csv"],
),
(
"{metadata[type]}_signal",
["sine_signal.csv", "cosine_signal.csv", "exponential_signal.csv"],
),
]
for basename_pattern, expected_files in test_cases:
execenv.print(f" Testing pattern: {basename_pattern}")
# Configure SaveToDirectoryParam
param = SaveToDirectoryParam()
param.directory = tmpdir
param.basename = basename_pattern
param.extension = ".csv"
param.overwrite = True # Allow overwriting for multiple test cases
# Build filenames to verify pattern
filenames = param.build_filenames(signals)
execenv.print(f" Generated filenames: {filenames}")
# Verify expected filenames
assert filenames == expected_files, (
f"Expected {expected_files}, got {filenames}"
)
execenv.print(" ✓ Pattern matched expected filenames")
execenv.print(f"{test_savetodir_param_formatting.__doc__}: OK")
def test_savetodir_param_collision_handling() -> None:
"""Test SaveToDirectoryParam collision handling and overwrite behavior."""
execenv.print(f"{test_savetodir_param_collision_handling.__doc__}:")
with WorkdirRestoringTempDir() as tmpdir:
# Create test signals with duplicate titles to force collision
signals = []
x = np.linspace(0, 10, 100)
for i in range(3):
y = np.sin(x + i)
signal = create_signal(
title="Test Signal", # Same title for all
x=x,
y=y,
metadata={"index": i},
)
signals.append(signal)
# Test collision handling without overwrite
param = SaveToDirectoryParam()
param.directory = tmpdir
param.basename = "{title}"
param.extension = ".h5sig"
param.overwrite = False
# Build filenames - should generate unique names
filenames = param.build_filenames(signals)
expected_files = [
"Test Signal.h5sig",
"Test Signal_1.h5sig",
"Test Signal_2.h5sig",
]
assert filenames == expected_files, (
f"Expected {expected_files}, got {filenames}"
)
execenv.print(f" ✓ Collision handling generated unique filenames: {filenames}")
# Write signals and verify files exist
write_signals(param, signals)
for filename in expected_files:
filepath = osp.join(tmpdir, filename)
assert osp.exists(filepath), f"File {filename} was not created"
execenv.print(f" ✓ Created: {filename}")
# Test overwrite behavior
param.overwrite = True
write_signals(param, signals[:1]) # Write only first signal
# With overwrite=True, should only create the first file
filepath = osp.join(tmpdir, "Test Signal.h5sig")
assert osp.exists(filepath), "File should exist after overwrite"
execenv.print(" ✓ Overwrite test passed")
execenv.print(f"{test_savetodir_param_collision_handling.__doc__}: OK")
def test_savetodir_param_metadata_access() -> None:
"""Test SaveToDirectoryParam accessing metadata fields in basename patterns."""
execenv.print(f"{test_savetodir_param_metadata_access.__doc__}:")
with WorkdirRestoringTempDir() as tmpdir:
# Create signals with rich metadata
signals = []
x = np.linspace(0, 10, 100)
metadata_list = [
{"experiment": "exp001", "sensor": "A", "temperature": "25C"},
{"experiment": "exp002", "sensor": "B", "temperature": "30C"},
{"experiment": "exp003", "sensor": "C", "temperature": "35C"},
]
for i, metadata in enumerate(metadata_list):
y = np.sin(x + i)
signal = create_signal(title=f"Signal {i + 1}", x=x, y=y, metadata=metadata)
signals.append(signal)
# Test accessing nested metadata in basename pattern
param = SaveToDirectoryParam()
param.directory = tmpdir
param.basename = (
"{metadata[experiment]}_{metadata[sensor]}_{metadata[temperature]}"
)
param.extension = ".csv"
param.overwrite = False
# Build and verify filenames
filenames = param.build_filenames(signals)
expected_files = ["exp001_A_25C.csv", "exp002_B_30C.csv", "exp003_C_35C.csv"]
assert filenames == expected_files, (
f"Expected {expected_files}, got {filenames}"
)
execenv.print(f" ✓ Metadata access in basename patterns: {filenames}")
# Write signals to verify the full workflow
write_signals(param, signals)
for filename in expected_files:
filepath = osp.join(tmpdir, filename)
assert osp.exists(filepath), f"File {filename} was not created"
execenv.print(f" ✓ Created: {filename}")
execenv.print(f"{test_savetodir_param_metadata_access.__doc__}: OK")
def test_savetodir_param_units_formatting() -> None:
"""Test SaveToDirectoryParam accessing units in basename patterns."""
execenv.print(f"{test_savetodir_param_units_formatting.__doc__}:")
with WorkdirRestoringTempDir() as tmpdir:
# Create signals with different units
signals = []
x = np.linspace(0, 10, 100)
units_list = [("s", "V"), ("ms", "mV"), ("us", "uV")]
for i, (xunit, yunit) in enumerate(units_list):
y = np.sin(x + i)
signal = create_signal(
title=f"Signal {i + 1}", x=x, y=y, units=(xunit, yunit)
)
signals.append(signal)
# Test accessing units in basename pattern
param = SaveToDirectoryParam()
param.directory = tmpdir
param.basename = "{title}_{xunit}_{yunit}"
param.extension = ".csv"
param.overwrite = False
# Build and verify filenames
filenames = param.build_filenames(signals)
expected_files = [
"Signal 1_s_V.csv",
"Signal 2_ms_mV.csv",
"Signal 3_us_uV.csv",
]
assert filenames == expected_files, (
f"Expected {expected_files}, got {filenames}"
)
execenv.print(f" ✓ Units access in basename patterns: {filenames}")
# Write signals to verify the full workflow
write_signals(param, signals)
for filename in expected_files:
filepath = osp.join(tmpdir, filename)
assert osp.exists(filepath), f"File {filename} was not created"
execenv.print(f" ✓ Created: {filename}")
execenv.print(f"{test_savetodir_param_units_formatting.__doc__}: OK")
def test_savetodir_param_edge_cases() -> None:
"""Test SaveToDirectoryParam edge cases and error handling."""
execenv.print(f"{test_savetodir_param_edge_cases.__doc__}:")
with WorkdirRestoringTempDir() as tmpdir:
# Test with empty signals list
param = SaveToDirectoryParam()
param.directory = tmpdir
param.basename = "{title}"
param.extension = ".h5sig"
param.overwrite = False
# Should handle empty list gracefully
write_signals(param, [])
execenv.print(" ✓ Handled empty signals list")
# Test with signals having special characters in titles
signals = []
x = np.linspace(0, 10, 100)
y = np.sin(x)
special_titles = [
"Signal/with/slashes",
"Signal:with:colons",
"Signal with spaces",
"Signal_with_underscores",
]
for title in special_titles:
signal = create_signal(title=title, x=x, y=y)
signals.append(signal)
# Test filename generation with special characters
filenames = param.build_filenames(signals)
execenv.print(f" Generated filenames with special chars: {filenames}")
# All filenames should be valid (no slashes/colons in actual filenames)
for filename in filenames:
assert "/" not in filename or "\\" not in filename, (
f"Invalid filename: {filename}"
)
execenv.print(" ✓ Handled special characters in titles")
# Test with very long directory path
long_subdir = "a" * 50 # Create a long subdirectory name
long_dir = osp.join(tmpdir, long_subdir)
os.makedirs(long_dir, exist_ok=True)
param.directory = long_dir
param.basename = "test"
param.extension = ".h5sig"
# Should handle long paths
write_signals(param, signals[:1])
expected_path = osp.join(long_dir, "test.h5sig")
assert osp.exists(expected_path), "File should be created in long path"
execenv.print(" ✓ Handled long directory path")
execenv.print(f"{test_savetodir_param_edge_cases.__doc__}: OK")
if __name__ == "__main__":
test_write_signals_basic()
test_write_images_basic()
test_savetodir_param_formatting()
test_savetodir_param_collision_handling()
test_savetodir_param_metadata_access()
test_savetodir_param_units_formatting()
test_savetodir_param_edge_cases()
|