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# Copyright (c) DataLab Platform Developers, BSD 3-Clause license, see LICENSE file.
"""
Unit tests for signal operations
--------------------------------
Features from the "Operations" menu are covered by this test.
The "Operations" menu contains basic operations on signals, such as
addition, multiplication, division, and more.
"""
# pylint: disable=invalid-name # Allows short reference names like x, y, ...
from __future__ import annotations
import warnings
import numpy as np
import pytest
import sigima.objects
import sigima.params
import sigima.proc.signal
import sigima.tests.data
from sigima.enums import (
AngleUnit,
MathOperator,
NormalizationMethod,
SignalsToImageOrientation,
)
from sigima.objects.signal import SignalObj
from sigima.proc.base import AngleUnitParam
from sigima.proc.signal import complex_from_magnitude_phase, complex_from_real_imag
from sigima.tests.helpers import check_array_result
from sigima.tools.coordinates import polar_to_complex
def __create_two_signals() -> tuple[sigima.objects.SignalObj, sigima.objects.SignalObj]:
"""Create two signals for testing."""
s1 = sigima.tests.data.create_periodic_signal(
sigima.objects.SignalTypes.COSINE, freq=50.0, size=100
)
s1.dy = 0.05 * np.ones_like(s1.y)
s2 = sigima.tests.data.create_periodic_signal(
sigima.objects.SignalTypes.SINE, freq=25.0, size=100
)
s2.dy = 0.8 * np.ones_like(s2.y)
return s1, s2
def __create_n_signals(n: int = 100) -> list[sigima.objects.SignalObj]:
"""Create a list of `n` different signals for testing."""
signals = []
for i in range(n):
s = sigima.tests.data.create_periodic_signal(
sigima.objects.SignalTypes.COSINE,
freq=50.0 + i,
size=100,
a=(i + 1) * 0.1,
)
s.dy = 0.5 * np.ones_like(s.y)
signals.append(s)
return signals
def __create_one_signal_and_constant() -> tuple[
sigima.objects.SignalObj, sigima.params.ConstantParam
]:
"""Create one signal and a constant for testing."""
s1 = sigima.tests.data.create_periodic_signal(
sigima.objects.SignalTypes.COSINE, freq=50.0, size=100
)
s1.dy = 0.5 * np.ones_like(s1.y)
param = sigima.params.ConstantParam.create(value=-np.pi)
return s1, param
@pytest.mark.validation
def test_signal_addition() -> None:
"""Signal addition test."""
slist = __create_n_signals()
n = len(slist)
s1 = sigima.proc.signal.addition(slist)
exp_y = np.zeros_like(s1.y)
for s in slist:
exp_y += s.y
check_array_result(f"Addition of {n} signals", s1.y, exp_y)
expected_dy = np.sqrt(sum(sig.dy**2 for sig in slist))
check_array_result("Addition error propagation", s1.dy, expected_dy)
@pytest.mark.validation
def test_signal_average() -> None:
"""Signal average test."""
slist = __create_n_signals()
n = len(slist)
s1 = sigima.proc.signal.average(slist)
exp_y = np.zeros_like(s1.y)
for s in slist:
exp_y += s.y
exp_y /= n
check_array_result(f"Average of {n} signals", s1.y, exp_y)
expected_dy = np.sqrt(sum(s.dy**2 for s in slist)) / n
check_array_result("Average error propagation", s1.dy, expected_dy)
@pytest.mark.validation
def test_signal_standard_deviation() -> None:
"""Signal standard deviation test."""
slist = __create_n_signals()
n = len(slist)
s1 = sigima.proc.signal.standard_deviation(slist)
exp = np.zeros_like(s1.y)
average = np.mean([s.y for s in slist], axis=0)
for s in slist:
exp += (s.y - average) ** 2
exp = np.sqrt(exp / n)
check_array_result(f"Standard Deviation of {n} signals", s1.y, exp)
# Add uncertainty to source signals:
for sig in slist:
sig.dy = np.abs(0.1 * sig.y) + 0.1
s2 = sigima.proc.signal.standard_deviation(slist)
expected_dy = exp / np.sqrt(2 * (n - 1))
check_array_result("Standard Deviation error propagation", s2.dy, expected_dy)
@pytest.mark.validation
def test_signal_product() -> None:
"""Signal multiplication test."""
slist = __create_n_signals()
n = len(slist)
s1 = sigima.proc.signal.product(slist)
exp_y = np.ones_like(s1.y)
for s in slist:
exp_y *= s.y
check_array_result(f"Product of {n} signals", s1.y, exp_y)
expected_dy = np.abs(exp_y) * np.sqrt(sum((s.dy / s.y) ** 2 for s in slist))
check_array_result("Product error propagation", s1.dy, expected_dy)
@pytest.mark.validation
def test_signal_difference() -> None:
"""Signal difference test."""
s1, s2 = __create_two_signals()
s3 = sigima.proc.signal.difference(s1, s2)
check_array_result("Signal difference", s3.y, s1.y - s2.y)
expected_dy = np.sqrt(s1.dy**2 + s2.dy**2)
check_array_result("Difference error propagation", s3.dy, expected_dy)
@pytest.mark.validation
def test_signal_quadratic_difference() -> None:
"""Signal quadratic difference validation test."""
s1, s2 = __create_two_signals()
s3 = sigima.proc.signal.quadratic_difference(s1, s2)
check_array_result("Signal quadratic difference", s3.y, (s1.y - s2.y) / np.sqrt(2))
@pytest.mark.validation
def test_signal_division() -> None:
"""Signal division test."""
s1, s2 = __create_two_signals()
s3 = sigima.proc.signal.division(s1, s2)
check_array_result("Signal division", s3.y, s1.y / s2.y)
expected_dy = np.abs(s1.y / s2.y) * np.sqrt(
(s1.dy / s1.y) ** 2 + (s2.dy / s2.y) ** 2
)
check_array_result("Division error propagation", s3.dy, expected_dy)
@pytest.mark.validation
def test_signal_addition_constant() -> None:
"""Signal addition with constant test."""
s1, param = __create_one_signal_and_constant()
s2 = sigima.proc.signal.addition_constant(s1, param)
check_array_result("Signal addition with constant", s2.y, s1.y + param.value)
# Error should be unchanged after addition of a constant
check_array_result("Addition constant error propagation", s2.dy, s1.dy)
@pytest.mark.validation
def test_signal_product_constant() -> None:
"""Signal multiplication by constant test."""
s1, param = __create_one_signal_and_constant()
s2 = sigima.proc.signal.product_constant(s1, param)
check_array_result("Signal multiplication by constant", s2.y, s1.y * param.value)
# Error is scaled by the absolute value of the constant
assert param.value is not None
expected_dy = np.abs(param.value) * s1.dy
check_array_result("Product constant error propagation", s2.dy, expected_dy)
@pytest.mark.validation
def test_signal_difference_constant() -> None:
"""Signal difference with constant test."""
s1, param = __create_one_signal_and_constant()
s2 = sigima.proc.signal.difference_constant(s1, param)
check_array_result("Signal difference with constant", s2.y, s1.y - param.value)
# Error is unchanged after subtraction of a constant
check_array_result("Difference constant error propagation", s2.dy, s1.dy)
@pytest.mark.validation
def test_signal_division_constant() -> None:
"""Signal division by constant test."""
s1, param = __create_one_signal_and_constant()
s2 = sigima.proc.signal.division_constant(s1, param)
check_array_result("Signal division by constant", s2.y, s1.y / param.value)
assert param.value is not None
expected_dy = s1.dy / np.abs(param.value)
check_array_result("Division constant error propagation", s2.dy, expected_dy)
@pytest.mark.validation
def test_signal_inverse() -> None:
"""Signal inversion validation test."""
s1 = __create_two_signals()[0]
inv_signal = sigima.proc.signal.inverse(s1)
with warnings.catch_warnings():
warnings.simplefilter("ignore", category=RuntimeWarning)
exp_y = 1.0 / s1.y
exp_y[np.isinf(exp_y)] = np.nan
expected_dy = np.abs(exp_y) * s1.dy / np.abs(s1.y)
expected_dy[np.isinf(expected_dy)] = np.nan
check_array_result("Signal inverse", inv_signal.y, exp_y)
check_array_result("Inverse error propagation", inv_signal.dy, expected_dy)
@pytest.mark.validation
def test_signal_absolute() -> None:
"""Absolute value validation test."""
s1 = __create_two_signals()[0]
abs_signal = sigima.proc.signal.absolute(s1)
check_array_result("Absolute value", abs_signal.y, np.abs(s1.y))
@pytest.mark.validation
def test_signal_real() -> None:
"""Real part validation test."""
s1 = __create_two_signals()[0]
re_signal = sigima.proc.signal.real(s1)
check_array_result("Real part", re_signal.y, np.real(s1.y))
@pytest.mark.validation
def test_signal_imag() -> None:
"""Imaginary part validation test."""
s1 = __create_two_signals()[0]
im_signal = sigima.proc.signal.imag(s1)
check_array_result("Imaginary part", im_signal.y, np.imag(s1.y))
@pytest.mark.validation
def test_signal_complex_from_real_imag() -> None:
"""Test :py:func:`sigima.proc.signal.complex_from_real_imag`."""
x = np.linspace(0.0, 1.0, 5)
real = np.array([1.0, 2.0, 3.0, 4.0, 5.0])
imag = np.array([10.0, 20.0, 30.0, 40.0, 50.0])
# Create SignalObj instances for real and imaginary parts
s_real = SignalObj("real")
s_real.set_xydata(x, real)
s_imag = SignalObj("imag")
s_imag.set_xydata(x, imag)
# Create complex signal from real and imaginary parts
result = complex_from_real_imag(s_real, s_imag)
check_array_result(
"complex_from_real_imag",
result.y,
real + 1j * imag,
)
@pytest.mark.validation
def test_signal_phase() -> None:
"""Phase angle validation test."""
# Create a base signal and make it complex for testing
base_signal = __create_two_signals()[0]
y_complex = base_signal.y + 1j * base_signal.y[::-1]
complex_signal = sigima.objects.create_signal("complex", base_signal.x, y_complex)
# Test phase extraction in radians without unwrapping
param_rad = sigima.params.PhaseParam.create(unit=AngleUnit.RADIAN, unwrap=False)
result_rad = sigima.proc.signal.phase(complex_signal, param_rad)
check_array_result("Phase in radians", result_rad.y, np.angle(y_complex))
# Test phase extraction in degrees without unwrapping
param_deg = sigima.params.PhaseParam.create(unit=AngleUnit.DEGREE, unwrap=False)
result_deg = sigima.proc.signal.phase(complex_signal, param_deg)
check_array_result("Phase in degrees", result_deg.y, np.angle(y_complex, deg=True))
# Test phase extraction in radians with unwrapping
param_rad_unwrap = sigima.params.PhaseParam.create(
unit=AngleUnit.RADIAN, unwrap=True
)
result_rad_unwrap = sigima.proc.signal.phase(complex_signal, param_rad_unwrap)
check_array_result(
"Phase in radians with unwrapping",
result_rad_unwrap.y,
np.unwrap(np.angle(y_complex)),
)
# Test phase extraction in degrees with unwrapping
param_deg_unwrap = sigima.params.PhaseParam.create(
unit=AngleUnit.DEGREE, unwrap=True
)
result_deg_unwrap = sigima.proc.signal.phase(complex_signal, param_deg_unwrap)
check_array_result(
"Phase in degrees with unwrapping",
result_deg_unwrap.y,
np.unwrap(np.angle(y_complex, deg=True), period=360.0),
)
MAGNITUDE_PHASE_TEST_CASES = [
(np.array([0.0, np.pi / 2, np.pi, 3.0 * np.pi / 2.0, 0.0]), AngleUnit.RADIAN),
(np.array([0.0, 90.0, 180.0, 270.0, 0.0]), AngleUnit.DEGREE),
]
@pytest.mark.parametrize("phase, unit", MAGNITUDE_PHASE_TEST_CASES)
@pytest.mark.validation
def test_signal_complex_from_magnitude_phase(
phase: np.ndarray, unit: AngleUnit
) -> None:
"""Test :py:func:`sigima.proc.signal.complex_from_magnitude_phase`.
Args:
phase (np.ndarray): Angles in radians or degrees.
unit (AngleUnit): Unit of the angles, either radian or degree.
"""
x = np.linspace(0.0, 1.0, 5)
magnitude = np.array([2.0, 3.0, 4.0, 5.0, 6.0])
# Create signal instances for magnitude and phase
s_mag = SignalObj("magnitude")
s_mag.set_xydata(x, magnitude)
s_phase = SignalObj("phase")
s_phase.set_xydata(x, phase)
# Create complex signal from magnitude and phase
p = AngleUnitParam.create(unit=unit)
result = complex_from_magnitude_phase(s_mag, s_phase, p)
unit_str = "rad" if unit == AngleUnit.RADIAN else "°"
check_array_result(
f"complex_from_magnitude_phase_{unit_str}",
result.y,
polar_to_complex(magnitude, phase, unit=unit_str),
)
def __test_all_complex_from_magnitude_phase() -> None:
"""Test all combinations of magnitude and phase."""
for phase, unit in MAGNITUDE_PHASE_TEST_CASES:
test_signal_complex_from_magnitude_phase(phase, unit)
@pytest.mark.validation
def test_signal_astype() -> None:
"""Data type conversion validation test."""
s1 = __create_two_signals()[0]
for dtype_str in sigima.objects.SignalObj.get_valid_dtypenames():
p = sigima.params.DataTypeSParam.create(dtype_str=dtype_str)
astype_signal = sigima.proc.signal.astype(s1, p)
assert astype_signal.y.dtype == np.dtype(dtype_str)
@pytest.mark.validation
def test_signal_exp() -> None:
"""Exponential validation test."""
s1 = __create_two_signals()[0]
exp_signal = sigima.proc.signal.exp(s1)
check_array_result("Exponential", exp_signal.y, np.exp(s1.y))
@pytest.mark.validation
def test_signal_log10() -> None:
"""Logarithm base 10 validation test."""
s1 = __create_two_signals()[0]
log10_signal = sigima.proc.signal.log10(sigima.proc.signal.exp(s1))
check_array_result("Logarithm base 10", log10_signal.y, np.log10(np.exp(s1.y)))
@pytest.mark.validation
def test_signal_sqrt() -> None:
"""Square root validation test."""
s1 = sigima.tests.data.get_test_signal("paracetamol.txt")
sqrt_signal = sigima.proc.signal.sqrt(s1)
check_array_result("Square root", sqrt_signal.y, np.sqrt(s1.y))
@pytest.mark.validation
def test_signal_power() -> None:
"""Power validation test."""
s1 = sigima.tests.data.get_test_signal("paracetamol.txt")
p = sigima.params.PowerParam.create(power=2.0)
power_signal = sigima.proc.signal.power(s1, p)
check_array_result("Power", power_signal.y, s1.y**p.power)
@pytest.mark.validation
def test_signal_arithmetic() -> None:
"""Arithmetic operations validation test."""
s1, s2 = __create_two_signals()
p = sigima.params.ArithmeticParam.create()
for operator in MathOperator:
p.operator = operator
for factor in (0.0, 1.0, 2.0):
p.factor = factor
for constant in (0.0, 1.0, 2.0):
p.constant = constant
s3 = sigima.proc.signal.arithmetic(s1, s2, p)
if operator == MathOperator.ADD:
exp = s1.y + s2.y
elif operator == MathOperator.MULTIPLY:
exp = s1.y * s2.y
elif operator == MathOperator.SUBTRACT:
exp = s1.y - s2.y
elif operator == MathOperator.DIVIDE:
exp = s1.y / s2.y
else:
raise ValueError(f"Unknown operator {operator}")
exp = exp * factor + constant
check_array_result(f"Arithmetic [{p.get_operation()}]", s3.y, exp)
@pytest.mark.validation
def test_signal_signals_to_image() -> None:
"""Signals to image conversion test."""
# Create test signals
slist = __create_n_signals(n=5)
n = len(slist)
size = len(slist[0].y)
# Test without normalization, as rows
p = sigima.params.SignalsToImageParam()
p.orientation = SignalsToImageOrientation.ROWS
p.normalize = False
img = sigima.proc.signal.signals_to_image(slist, p)
assert img.data.shape == (n, size), (
f"Expected shape ({n}, {size}), got {img.data.shape}"
)
for i, sig in enumerate(slist):
title = f"Signals to image (rows) - signal {i}"
check_array_result(title, img.data[i], sig.y)
# Test without normalization, as columns
p.orientation = SignalsToImageOrientation.COLUMNS
img = sigima.proc.signal.signals_to_image(slist, p)
assert img.data.shape == (size, n), (
f"Expected shape ({size}, {n}), got {img.data.shape}"
)
for i, sig in enumerate(slist):
title = f"Signals to image (columns) - signal {i}"
check_array_result(title, img.data[:, i], sig.y)
# Test with normalization
p.normalize = True
p.normalize_method = NormalizationMethod.MAXIMUM
p.orientation = SignalsToImageOrientation.ROWS
img = sigima.proc.signal.signals_to_image(slist, p)
for i, sig in enumerate(slist):
expected = sig.y / np.max(np.abs(sig.y))
title = f"Signals to image (normalized rows) - signal {i}"
check_array_result(title, img.data[i], expected)
if __name__ == "__main__":
test_signal_addition()
test_signal_average()
test_signal_product()
test_signal_difference()
test_signal_quadratic_difference()
test_signal_division()
test_signal_addition_constant()
test_signal_product_constant()
test_signal_difference_constant()
test_signal_division_constant()
test_signal_inverse()
test_signal_absolute()
test_signal_real()
test_signal_imag()
test_signal_complex_from_real_imag()
test_signal_phase()
__test_all_complex_from_magnitude_phase()
test_signal_astype()
test_signal_exp()
test_signal_log10()
test_signal_sqrt()
test_signal_power()
test_signal_arithmetic()
test_signal_signals_to_image()
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