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export DEB_BUILD_MAINT_OPTIONS = hardening=+bindnow
export DEB_CPPFLAGS_MAINT_APPEND = -I$(CURDIR)
export PYBUILD_NAME=skbio
export MPLBACKEND=agg
DOCPKG=python-$(PYBUILD_NAME)-doc
export USE_CYTHON=1
%:
dh $@ --with python3,sphinxdoc --buildsystem=pybuild
override_dh_auto_configure:
mv simde-sse2.h simde-sse2.h.orig
rm -f skbio/alignment/_ssw_wrapper.c skbio/diversity/_phylogenetic.c skbio/stats/__subsample.c skbio/metadata/_intersection.c
dh_auto_configure
override_dh_auto_build-arch:
dh_auto_build
override_dh_auto_build-indep:
dh_auto_build
ifeq (,$(findstring nodoc,$(DEB_BUILD_OPTIONS) $(DEB_BUILD_PROFILES)))
PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) \
http_proxy='127.0.0.1:9' \
python3 `which sphinx-build` -b html -d doc/build/doctrees doc/source doc/build/html
endif
override_dh_auto_test-indep:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
echo No testing for the -doc package
endif
override_dh_auto_clean:
if [ "`find . -name "*.pyo"`" = "" ] ; then echo no need to clean up ; else dh_auto_clean; fi
override_dh_clean:
dh_clean
find ./skbio -name '*.so' -delete
find ./skbio -name '*.o' -delete
rm -rf doc/build build doc/source/generated
find doc -name *.doctree -delete
rm -rf .pybuild
rm -f scikit_bio.egg-info/PKG-INFO scikit_bio.egg-info/SOURCES.txt scikit_bio.egg-info/dependency_links.txt scikit_bio.egg-info/requires.txt scikit_bio.egg-info/top_level.txt
rm -f skbio/alignment/_ssw_wrapper.c skbio/diversity/_phylogenetic.c skbio/stats/__subsample.c skbio/metadata/_intersection.c
mv simde-sse2.h.orig simde-sse2.h || true
override_dh_sphinxdoc:
ifeq (,$(findstring nodoc,$(DEB_BUILD_OPTIONS) $(DEB_BUILD_PROFILES)))
dh_link --package=$(DOCPKG) \
/usr/share/javascript/mathjax/MathJax.js \
/usr/share/doc/$(DOCPKG)/html/_static/MathJax.js
dh_sphinxdoc --package=$(DOCPKG)
endif
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