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# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE.txt, distributed with this software.
# ----------------------------------------------------------------------------
class IOSourceError(Exception):
"""Raised when a file source cannot be resolved."""
pass
class FileFormatError(Exception):
"""Raised when a file cannot be parsed."""
pass
class UnrecognizedFormatError(FileFormatError):
"""Raised when a file's format is unknown, ambiguous, or unidentifiable."""
pass
class GenBankFormatError(FileFormatError):
"""Raised when a ``genbank`` formatted file cannot be parsed."""
pass
class EMBLFormatError(FileFormatError):
"""Raised when a ``EMBL`` formatted file cannot be parsed."""
pass
class GFF3FormatError(FileFormatError):
"""Raised when a ``GFF3`` formatted file cannot be parsed."""
pass
class BLAST7FormatError(FileFormatError):
"""Raised when a ``blast7`` formatted file cannot be parsed."""
pass
class ClustalFormatError(FileFormatError):
"""Raised when a ``clustal`` formatted file cannot be parsed."""
pass
class FASTAFormatError(FileFormatError):
"""Raised when a ``fasta`` formatted file cannot be parsed."""
pass
class QUALFormatError(FASTAFormatError):
"""Raised when a ``qual`` formatted file cannot be parsed."""
pass
class LSMatFormatError(FileFormatError):
"""Raised when a ``lsmat`` formatted file cannot be parsed."""
pass
class OrdinationFormatError(FileFormatError):
"""Raised when an ``ordination`` formatted file cannot be parsed."""
pass
class NewickFormatError(FileFormatError):
"""Raised when a ``newick`` formatted file cannot be parsed."""
pass
class FASTQFormatError(FileFormatError):
"""Raised when a ``fastq`` formatted file cannot be parsed."""
pass
class PhylipFormatError(FileFormatError):
"""Raised when a ``phylip`` formatted file cannot be parsed.
May also be raised when an object (e.g., ``TabularMSA``) cannot be written
in ``phylip`` format.
"""
pass
class QSeqFormatError(FileFormatError):
"""Raised when a ``qseq`` formatted file cannot be parsed."""
pass
class StockholmFormatError(FileFormatError):
"""Raised when a ``stockholm`` formatted file cannot be parsed."""
pass
class InvalidRegistrationError(Exception):
"""Raised if function doesn't meet the expected API of its registration."""
pass
class DuplicateRegistrationError(Exception):
"""Raised when a function is already registered in skbio.io"""
pass
|
