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# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE.txt, distributed with this software.
# ----------------------------------------------------------------------------
ifeq ($(WITH_COVERAGE), TRUE)
TEST_COMMAND = coverage run --rcfile ../.coveragerc -m skbio.test && coverage report --rcfile ../.coveragerc
else
TEST_COMMAND = python -m skbio.test
endif
.PHONY: doc web lint test dev install
doc:
$(MAKE) -C doc clean html
web:
$(MAKE) -C web clean html
clean:
$(MAKE) -C doc clean
$(MAKE) -C web clean
rm -rf build dist scikit_bio.egg-info
lint:
ruff check skbio setup.py checklist.py
./checklist.py
check-manifest
# cd into a directory that is different from scikit-bio root directory to
# simulate a user's install and testing of scikit-bio. Running from the root
# directory will find the `skbio` subpackage (not necessarily the installed
# one!) because cwd is considered in Python's search path. It is important to
# simulate a user's install/test process this way to find package data that did
# not install correctly (for example).
test:
cd ci && $(TEST_COMMAND)
install:
pip install .
dev:
pip install -e .
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