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# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE.txt, distributed with this software.
# ----------------------------------------------------------------------------
# ruff: noqa: D104
# Add skbio.io to sys.modules to prevent cycles in our imports
import skbio.io # noqa
# imports included for convenience
from skbio.sequence import Sequence, DNA, RNA, Protein, GeneticCode, SubstitutionMatrix
from skbio.stats.distance import DistanceMatrix
from skbio.alignment import local_pairwise_align_ssw, TabularMSA
from skbio.tree import TreeNode, nj
from skbio.embedding import ProteinEmbedding
from skbio.io import read, write
from skbio.stats.ordination import OrdinationResults
from skbio.table import Table
from skbio.metadata import SampleMetadata
import skbio.diversity # noqa
import skbio.stats.evolve # noqa
__all__ = [
"Sequence",
"DNA",
"RNA",
"Protein",
"GeneticCode",
"SubstitutionMatrix",
"DistanceMatrix",
"TabularMSA",
"local_pairwise_align_ssw",
"TreeNode",
"nj",
"read",
"write",
"OrdinationResults",
"Table",
"SampleMetadata",
]
__credits__ = "https://github.com/scikit-bio/scikit-bio/graphs/contributors"
__version__ = "0.6.2"
mottos = [
# 03/15/2014
"It's gonna get weird, bro.",
# 05/14/2014
"no cog yay",
# 03/18/2015
"bincount!",
]
motto = mottos[-1]
# Created at patorjk.com
title = r"""
* *
_ _ _ _ _ _
(_) | (_) | | | (_)
___ ___ _| | ___| |_ ______| |__ _ ___
/ __|/ __| | |/ / | __|______| '_ \| |/ _ \
\__ \ (__| | <| | |_ | |_) | | (_) |
|___/\___|_|_|\_\_|\__| |_.__/|_|\___/
* *
"""
# Created by @gregcaporaso
art = r"""
Opisthokonta
\ Amoebozoa
\ /
* Euryarchaeota
\ |_ Crenarchaeota
\ *
\ /
*
/
/
/
*
/ \
/ \
Proteobacteria \
Cyanobacteria
"""
__doc__ = title + art + (__doc__ or "")
|
