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'''
Runs unit tests of functions associated with the ENVI file format.
To run the unit tests, type the following from the system command line:
# python -m spectral.tests.envi
'''
from __future__ import absolute_import, division, print_function, unicode_literals
import numpy as np
from numpy.testing import assert_almost_equal
import os
import spectral as spy
from spectral.io.envi import SpectralLibrary
from spectral.tests import testdir
from spectral.tests.spytest import SpyTest
MIXED_CASE_HEADER = '''ENVI
samples = 145
lines = 145
bands = 220
header offset = 0
file type = ENVI Standard
data type = 4
interleave = bip
byte order = 0
some Param = 0
'''
class ENVIWriteTest(SpyTest):
'''Tests that SpyFile memmap interfaces read and write properly.'''
def __init__(self):
pass
def setup(self):
if not os.path.isdir(testdir):
os.makedirs(testdir)
def test_save_image_ndarray(self):
'''Test saving an ENVI formated image from a numpy.ndarray.'''
(R, B, C) = (10, 20, 30)
(r, b, c) = (3, 8, 23)
datum = 33
data = np.zeros((R, B, C), dtype=np.uint16)
data[r, b, c] = datum
fname = os.path.join(testdir, 'test_save_image_ndarray.hdr')
spy.envi.save_image(fname, data, interleave='bil')
img = spy.open_image(fname)
assert_almost_equal(img[r, b, c], datum)
def test_save_image_ndarray_no_ext(self):
'''Test saving an ENVI formated image with no image file extension.'''
data = np.arange(1000, dtype=np.int16).reshape(10, 10, 10)
base = os.path.join(testdir, 'test_save_image_ndarray_noext')
hdr_file = base + '.hdr'
spy.envi.save_image(hdr_file, data, ext='')
rdata = spy.open_image(hdr_file).load()
assert(np.all(data==rdata))
def test_save_image_ndarray_alt_ext(self):
'''Test saving an ENVI formated image with alternate extension.'''
data = np.arange(1000, dtype=np.int16).reshape(10, 10, 10)
base = os.path.join(testdir, 'test_save_image_ndarray_alt_ext')
hdr_file = base + '.hdr'
ext = '.foo'
img_file = base + ext
spy.envi.save_image(hdr_file, data, ext=ext)
rdata = spy.envi.open(hdr_file, img_file).load()
assert(np.all(data==rdata))
def test_save_image_spyfile(self):
'''Test saving an ENVI formatted image from a SpyFile object.'''
(r, b, c) = (3, 8, 23)
fname = os.path.join(testdir, 'test_save_image_spyfile.hdr')
src = spy.open_image('92AV3C.lan')
spy.envi.save_image(fname, src)
img = spy.open_image(fname)
assert_almost_equal(src[r, b, c], img[r, b, c])
def test_create_image_metadata(self):
'''Test calling `envi.create_image` using a metadata dict.'''
(R, B, C) = (10, 20, 30)
(r, b, c) = (3, 8, 23)
offset = 1024
datum = 33
md = {'lines': R,
'samples': B,
'bands': C,
'interleave': 'bsq',
'header offset': offset,
'data type': 12,
'USER DEFINED': 'test case insensitivity'}
fname = os.path.join(testdir, 'test_create_image_metadata.hdr')
img = spy.envi.create_image(fname, md)
mm = img.open_memmap(writable=True)
mm.fill(0)
mm[r, b, c] = datum
mm.flush()
img = spy.open_image(fname)
img._disable_memmap()
assert_almost_equal(img[r, b, c], datum)
assert(img.offset == offset)
for key in md:
assert key.lower() in img.metadata
assert str(md[key]) == img.metadata[key.lower()]
def test_create_image_keywords(self):
'''Test calling `envi.create_image` using keyword args.'''
(R, B, C) = (10, 20, 30)
(r, b, c) = (3, 8, 23)
offset = 1024
datum = 33
fname = os.path.join(testdir, 'test_create_image_keywords.hdr')
img = spy.envi.create_image(fname, shape=(R,B,C),
interleave='bsq',
dtype=np.uint16,
offset=offset)
mm = img.open_memmap(writable=True)
mm.fill(0)
mm[r, b, c] = datum
mm.flush()
img = spy.open_image(fname)
img._disable_memmap()
assert_almost_equal(img[r, b, c], datum)
assert(img.offset == offset)
def test_save_invalid_dtype_fails(self):
'''Should not be able to write unsupported data type to file.'''
from spectral.io.envi import EnviDataTypeError
a = np.random.randint(0, 200, 900).reshape((30, 30)).astype(np.int8)
fname = os.path.join(testdir, 'test_save_invalid_dtype_fails.hdr')
try:
spy.envi.save_image('invalid.hdr', a)
except EnviDataTypeError as e:
pass
else:
raise Exception('Expected EnviDataTypeError to be raised.')
def test_save_load_classes(self):
'''Verify that `envi.save_classification` saves data correctly.'''
fname = os.path.join(testdir, 'test_save_load_classes.hdr')
gt = spy.open_image('92AV3GT.GIS').read_band(0)
spy.envi.save_classification(fname, gt, dtype=np.uint8)
gt2 = spy.open_image(fname).read_band(0)
assert(np.all(gt == gt2))
def test_open_nonzero_frame_offset_fails(self):
'''Opening files with nonzero frame offsets should fail.'''
img = spy.open_image('92AV3C.lan')
fname = os.path.join(testdir, 'test_open_nonzero_frame_offset_fails.hdr')
spy.envi.save_image(fname, img)
fout = open(fname, 'a')
fout.write('major frame offsets = 128\n')
fout.close()
try:
img2 = spy.envi.open(fname)
except spy.envi.EnviFeatureNotSupported:
pass
else:
raise Exception('File erroneously opened.')
def test_open_zero_frame_offset_passes(self):
'''Files with frame offsets set to zero should open.'''
img = spy.open_image('92AV3C.lan')
fname = os.path.join(testdir, 'test_open_zero_frame_offset_passes.hdr')
spy.envi.save_image(fname, img)
fout = open(fname, 'a')
fout.write('major frame offsets = 0\n')
fout.write('minor frame offsets = {0, 0}\n')
fout.close()
img2 = spy.envi.open(fname)
def test_save_nonzero_frame_offset_fails(self):
'''Opening files with nonzero frame offsets should fail.'''
img = spy.open_image('92AV3C.lan')
fname = os.path.join(testdir, 'test_save_nonzero_frame_offset_fails.hdr')
meta = {'major frame offsets' : [128, 0]}
try:
spy.envi.save_image(fname, img, metadata=meta)
except spy.envi.EnviFeatureNotSupported:
pass
else:
raise Exception('File erroneously saved.')
def test_save_zero_frame_offset_passes(self):
'''Opening files with nonzero frame offsets should fail.'''
img = spy.open_image('92AV3C.lan')
fname = os.path.join(testdir, 'test_save_zero_frame_offset_passes.hdr')
meta = {'major frame offsets' : 0}
spy.envi.save_image(fname, img, metadata=meta)
def test_catch_parse_error(self):
'''Failure to parse parameters should raise EnviHeaderParsingError.'''
img = spy.open_image('92AV3C.lan')
fname = os.path.join(testdir, 'test_catch_parse_error.hdr')
spy.envi.save_image(fname, img)
fout = open(fname, 'a')
fout.write('foo = {{\n')
fout.close()
try:
img2 = spy.envi.open(fname)
except spy.envi.EnviHeaderParsingError:
pass
else:
raise Exception('Failed to raise EnviHeaderParsingError')
def test_header_missing_mandatory_parameter_fails(self):
'''Missing mandatory parameter should raise EnviMissingHeaderParameter.'''
img = spy.open_image('92AV3C.lan')
fname = os.path.join(testdir, 'test_missing_param_fails.hdr')
spy.envi.save_image(fname, img)
lines = [line for line in open(fname).readlines() \
if 'bands' not in line]
fout = open(fname, 'w')
for line in lines:
fout.write(line)
fout.close()
try:
img2 = spy.envi.open(fname)
except spy.envi.MissingEnviHeaderParameter:
pass
else:
raise Exception('Failed to raise EnviMissingHeaderParameter')
def test_param_name_converted_to_lower_case(self):
'''By default, parameter names are converted to lower case.'''
header = 'mixed_case_header.hdr'
open(header, 'w').write(MIXED_CASE_HEADER)
h = spy.envi.read_envi_header(header)
assert('some param' in h)
def test_support_nonlowercase_params(self):
'''By default, parameter names are converted to lower case.'''
header = 'mixed_case_header.hdr'
open(header, 'w').write(MIXED_CASE_HEADER)
orig = spy.settings.envi_support_nonlowercase_params
try:
spy.settings.envi_support_nonlowercase_params = True
h = spy.envi.read_envi_header(header)
finally:
spy.settings.envi_support_nonlowercase_params = orig
assert('some Param' in h)
def test_missing_ENVI_in_header_fails(self):
'''FileNotAnEnviHeader should be raised if "ENVI" not on first line.'''
img = spy.open_image('92AV3C.lan')
fname = os.path.join(testdir, 'test_header_missing_ENVI_fails.hdr')
spy.envi.save_image(fname, img)
lines = open(fname).readlines()
fout = open(fname, 'w')
for line in lines[1:]:
fout.write(line)
fout.close()
try:
img2 = spy.envi.open(fname)
except spy.envi.FileNotAnEnviHeader:
pass
else:
raise Exception('Failed to raise EnviMissingHeaderParameter')
def test_open_missing_data_raises_envidatafilenotfounderror(self):
'''EnviDataFileNotFound should be raise if data file is not found.'''
img = spy.open_image('92AV3C.lan')
fname = os.path.join(testdir, 'header_without_data.hdr')
spy.envi.save_image(fname, img, ext='.img')
os.unlink(os.path.splitext(fname)[0] + '.img')
try:
img2 = spy.envi.open(fname)
except spy.envi.EnviDataFileNotFoundError:
pass
else:
raise Exception('Expected EnviDataFileNotFoundError')
def test_create_spectral_lib_with_header(self):
'''Can create ENVI spectral library from numpy array with bands.'''
img = spy.open_image('92AV3C.lan')
(nrows, ncols, nbands) = img.shape
header = {'wavelength': np.arange(nbands).astype(np.float32)}
slib = SpectralLibrary(img[0, :20, :].squeeze(), header)
basename = os.path.join(testdir, 'slib')
slib.save(basename)
slib = spy.envi.open(basename + '.hdr')
assert(slib.spectra.shape == (20, nbands))
def test_create_spectral_lib_without_header(self):
'''Can create ENVI spectral library from numpy array without bands.'''
img = spy.open_image('92AV3C.lan')
(nrows, ncols, nbands) = img.shape
slib = SpectralLibrary(img[0, :20, :].squeeze())
basename = os.path.join(testdir, 'slib')
slib.save(basename)
slib = spy.envi.open(basename + '.hdr')
assert(slib.spectra.shape == (20, nbands))
def run():
print('\n' + '-' * 72)
print('Running ENVI tests.')
print('-' * 72)
write_test = ENVIWriteTest()
write_test.run()
if __name__ == '__main__':
from spectral.tests.run import parse_args, reset_stats, print_summary
parse_args()
reset_stats()
run()
print_summary()
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