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"""Graphing utilities for EventStreams"""
from __future__ import absolute_import, division, print_function
from functools import partial
import os
import re
def _clean_text(text, match=None):
''' Clean text, remove forbidden characters.
'''
# all non alpha numeric characters, except for _ and :
# replace them with space
# the + condenses a group of consecutive characters all into one space
# (rather than assigning a space to each)
if match is None:
match = '[^a-zA-Z0-9_:]+'
text = re.sub(match, ' ', text)
# now replace the colon with semicolon
text = re.sub(":", ";", text)
return text
def build_node_set(node, s=None):
"""Build a set of all the nodes in a streamz graph
Parameters
----------
node : Stream
The node to use as a starting point for building the set
s : set or None
The set to put the nodes into. If None return a new set full of nodes
Returns
-------
s : set
The set of nodes in the graph
"""
if s is None:
s = set()
if node is None or (
node in s
and all(n in s for n in node.upstreams)
and all(n in s for n in node.downstreams)
):
return
new_nodes = {n for n in node.downstreams}
new_nodes.update(node.upstreams)
new_nodes.add(node)
s.update(new_nodes)
[build_node_set(n, s) for n in list(new_nodes)]
return s
def create_graph(node, graph):
"""Create networkx graph of the pipeline
Parameters
----------
node : Stream
The node to start from
graph : networkx.DiGraph
The graph to fill with nodes
Returns
-------
"""
# Step 1 build a set of all the nodes
node_set = build_node_set(node)
# Step 2 for each node in the set add to the graph
for n in node_set:
t = hash(n)
graph.add_node(
t,
label=_clean_text(str(n)),
shape=n._graphviz_shape,
orientation=str(n._graphviz_orientation),
style=n._graphviz_style,
fillcolor=n._graphviz_fillcolor,
)
# Step 3 for each node establish its edges
for n in node_set:
t = hash(n)
for nn in n.upstreams:
tt = hash(nn)
graph.add_edge(tt, t)
downstreams = n.downstreams
for i, nn in enumerate(downstreams):
tt = hash(nn)
if len(downstreams) > 1:
graph.add_edge(t, tt, label=str(i))
else:
graph.add_edge(t, tt)
# Step 4 destroy set
del node_set
def readable_graph(graph):
"""Create human readable version of this object's task graph.
Parameters
----------
graph: nx.DiGraph instance
The networkx graph representing the pipeline
"""
import networkx as nx
mapping = {k: "{}".format(graph.nodes[k]["label"]) for k in graph}
idx_mapping = {}
for k, v in mapping.items():
if v in idx_mapping.keys():
idx_mapping[v] += 1
mapping[k] += "-{}".format(idx_mapping[v])
else:
idx_mapping[v] = 0
gg = {k: v for k, v in mapping.items()}
rg = nx.relabel_nodes(graph, gg, copy=True)
return rg
def to_graphviz(graph, **graph_attr):
import graphviz
digraph_kwargs = {'name', 'comment', 'filename',
'format', 'engine', 'encoding',
'graph_attr', 'node_attr', 'edge_attr',
'body', 'strict', 'directory'}
if not digraph_kwargs.intersection(graph_attr):
graph_attr = dict(graph_attr=graph_attr)
gvz = graphviz.Digraph(**graph_attr)
for node, attrs in graph.nodes.items():
gvz.node(node, **attrs)
for edge, attrs in graph.edges().items():
gvz.edge(edge[0], edge[1], **attrs)
return gvz
def visualize(node, filename="mystream.png", **kwargs):
"""
Render a task graph using dot.
If `filename` is not None, write a file to disk with that name in the
format specified by `format`. `filename` should not include an extension.
Parameters
----------
node : Stream instance
The stream to display.
filename : str or None, optional
The name (without an extension) of the file to write to disk. If
`filename` is None, no file will be written, and we communicate with
dot using only pipes. Default is 'mydask'.
format : {'png', 'pdf', 'dot', 'svg', 'jpeg', 'jpg'}, optional
Format in which to write output file. Default is 'png'.
Returns
-------
result : None or IPython.display.Image or IPython.display.SVG (See below.)
Notes
-----
If IPython is installed, we return an IPython.display object in the
requested format. If IPython is not installed, we just return None.
We always return None if format is 'pdf' or 'dot', because IPython can't
display these formats natively. Passing these formats with filename=None
will not produce any useful output.
See Also
--------
streams.graph.readable_graph
"""
import networkx as nx
nx_g = nx.DiGraph()
create_graph(node, nx_g)
rg = readable_graph(nx_g)
g = to_graphviz(rg, **kwargs)
fmts = [".png", ".pdf", ".dot", ".svg", ".jpeg", ".jpg"]
if filename is None:
format = "png"
elif any(filename.lower().endswith(fmt) for fmt in fmts):
filename, format = os.path.splitext(filename)
format = format[1:].lower()
else:
format = "png"
data = g.pipe(format=format)
if not data:
raise RuntimeError(
"Graphviz failed to properly produce an image. "
"This probably means your installation of graphviz "
"is missing png support. See: "
"https://github.com/ContinuumIO/anaconda-issues/"
"issues/485 for more information."
)
display_cls = _get_display_cls(format)
if not filename:
return display_cls(data=data)
full_filename = ".".join([filename, format])
with open(full_filename, "wb") as f:
f.write(data)
return display_cls(filename=full_filename)
IPYTHON_IMAGE_FORMATS = frozenset(["jpeg", "png"])
IPYTHON_NO_DISPLAY_FORMATS = frozenset(["dot", "pdf"])
def _get_display_cls(format):
"""
Get the appropriate IPython display class for `format`.
Returns `IPython.display.SVG` if format=='svg', otherwise
`IPython.display.Image`.
If IPython is not importable, return dummy function that swallows its
arguments and returns None.
"""
dummy = lambda *args, **kwargs: None
try:
import IPython.display as display
except ImportError:
# Can't return a display object if no IPython.
return dummy
if format in IPYTHON_NO_DISPLAY_FORMATS:
# IPython can't display this format natively, so just return None.
return dummy
elif format in IPYTHON_IMAGE_FORMATS:
# Partially apply `format` so that `Image` and `SVG` supply a uniform
# interface to the caller.
return partial(display.Image, format=format)
elif format == "svg":
return display.SVG
else:
raise ValueError("Unknown format '%s' passed to `dot_graph`" % format)
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