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***********************
GTR class documentation
***********************
.. autoclass:: treetime.GTR
:members: __init__
.. automethod:: treetime.GTR.standard
.. automethod:: treetime.GTR.custom
.. automethod:: treetime.GTR.random
.. automethod:: treetime.GTR.infer
.. automethod:: treetime.GTR.assign_rates
.. Note::
GTR object can be modified in-place by calling :py:func:`treetime.GTR.assign_rates`
Sequence manipulation
---------------------
.. automethod:: treetime.GTR.state_pair
Distance and probability computations
-------------------------------------
.. automethod:: treetime.GTR.optimal_t
.. automethod:: treetime.GTR.optimal_t_compressed
.. automethod:: treetime.GTR.prob_t
.. automethod:: treetime.GTR.prob_t_compressed
.. automethod:: treetime.GTR.prob_t_profiles
.. automethod:: treetime.GTR.propagate_profile
.. automethod:: treetime.GTR.sequence_logLH
.. automethod:: treetime.GTR.expQt
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