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from setuptools import setup
def get_version():
v = "0.0.0"
with open('treetime/__init__.py') as ifile:
for line in ifile:
if line[:7]=='version':
v = line.split('=')[-1].strip()[1:-1]
break
return v
with open("README.md", "r") as fh:
long_description = fh.read()
setup(
name = "phylo-treetime",
version = get_version(),
author = "Pavel Sagulenko, Emma Hodcroft, and Richard Neher",
author_email = "richard.neher@unibas.ch",
description = ("Maximum-likelihood phylodynamic inference"),
long_description = long_description,
long_description_content_type="text/markdown",
license = "MIT",
keywords = "Time-stamped phylogenies, phylogeography, virus evolution",
url = "https://github.com/neherlab/treetime",
packages=['treetime'],
install_requires = [
'biopython>=1.67,!=1.77,!=1.78',
'numpy>=1.10.4',
'pandas>=0.17.1',
'scipy>=0.16.1'
],
extras_require = {
':python_version >= "3.6"':['matplotlib>=2.0'],
},
classifiers=[
"Development Status :: 5 - Production/Stable",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
],
entry_points = {
"console_scripts": [
"treetime = treetime.__main__:main",
]
}
)
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