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#!/usr/bin/env bash
set -euo pipefail
cd test
# Remove treetime_examples in case it exists to not fail
rm -rf treetime_examples
git clone https://github.com/neherlab/treetime_examples.git
bash command_line_tests.sh
OUT=$?
if [ "$OUT" != 0 ]; then
exit 1
fi
pytest test_treetime.py
if [ "$OUT" != 0 ]; then
exit 1
fi
pytest test_vcf.py
if [ "$OUT" != 0 ]; then
exit 1
fi
# Clean up, the 202* is to remove auto-generated output dirs
rm -rf treetime_examples __pycache__ 202*
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