1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
|
Substitution rate (mu): 1.0
Equilibrium frequencies (pi_i):
A: 0.3088
C: 0.1897
G: 0.2335
T: 0.2581
-: 0.0099
Symmetrized rates from j->i (W_ij):
A C G T -
A 0 0.7003 3.0669 0.2651 0.9742
C 0.7003 0 0.3354 3.399 0.999
G 3.0669 0.3354 0 0.4258 0.9892
T 0.2651 3.399 0.4258 0 0.9848
- 0.9742 0.999 0.9892 0.9848 0
Actual rates from j->i (Q_ij):
A C G T -
A 0 0.2163 0.9472 0.0819 0.3009
C 0.1328 0 0.0636 0.6448 0.1895
G 0.716 0.0783 0 0.0994 0.2309
T 0.0684 0.8772 0.1099 0 0.2541
- 0.0097 0.0099 0.0098 0.0098 0
|
