File: datatree.rst

package info (click to toggle)
python-xarray 2025.08.0-1
  • links: PTS, VCS
  • area: main
  • in suites: sid
  • size: 11,796 kB
  • sloc: python: 115,416; makefile: 258; sh: 47
file content (307 lines) | stat: -rw-r--r-- 5,784 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
.. currentmodule:: xarray

DataTree
========

Creating a DataTree
-------------------

Methods of creating a ``DataTree``.

.. autosummary::
   :toctree: ../generated/

   DataTree
   DataTree.from_dict

Tree Attributes
---------------

Attributes relating to the recursive tree-like structure of a ``DataTree``.

.. autosummary::
   :toctree: ../generated/

   DataTree.parent
   DataTree.children
   DataTree.name
   DataTree.path
   DataTree.root
   DataTree.is_root
   DataTree.is_leaf
   DataTree.leaves
   DataTree.level
   DataTree.depth
   DataTree.width
   DataTree.subtree
   DataTree.subtree_with_keys
   DataTree.descendants
   DataTree.siblings
   DataTree.lineage
   DataTree.parents
   DataTree.ancestors
   DataTree.groups
   DataTree.xindexes

Data Contents
-------------

Interface to the data objects (optionally) stored inside a single ``DataTree`` node.
This interface echoes that of ``xarray.Dataset``.

.. autosummary::
   :toctree: ../generated/

   DataTree.dims
   DataTree.sizes
   DataTree.data_vars
   DataTree.ds
   DataTree.coords
   DataTree.attrs
   DataTree.encoding
   DataTree.indexes
   DataTree.nbytes
   DataTree.dataset
   DataTree.to_dataset
   DataTree.has_data
   DataTree.has_attrs
   DataTree.is_empty
   DataTree.is_hollow
   DataTree.chunksizes

Dictionary Interface
--------------------

``DataTree`` objects also have a dict-like interface mapping keys to either ``xarray.DataArray``\s or to child ``DataTree`` nodes.

.. autosummary::
   :toctree: ../generated/

   DataTree.__getitem__
   DataTree.__setitem__
   DataTree.__delitem__
   DataTree.update
   DataTree.get
   DataTree.items
   DataTree.keys
   DataTree.values

Tree Manipulation
-----------------

For manipulating, traversing, navigating, or mapping over the tree structure.

.. autosummary::
   :toctree: ../generated/

   DataTree.orphan
   DataTree.same_tree
   DataTree.relative_to
   DataTree.iter_lineage
   DataTree.find_common_ancestor
   DataTree.map_over_datasets
   DataTree.pipe
   DataTree.match
   DataTree.filter
   DataTree.filter_like

Pathlib-like Interface
----------------------

``DataTree`` objects deliberately echo some of the API of :py:class:`pathlib.PurePath`.

.. autosummary::
   :toctree: ../generated/

   DataTree.name
   DataTree.parent
   DataTree.parents
   DataTree.relative_to

.. Missing:

.. ..

..    ``DataTree.glob``
..    ``DataTree.joinpath``
..    ``DataTree.with_name``
..    ``DataTree.walk``
..    ``DataTree.rename``
..    ``DataTree.replace``

DataTree Contents
-----------------

Manipulate the contents of all nodes in a ``DataTree`` simultaneously.

.. autosummary::
   :toctree: ../generated/

   DataTree.copy

   .. DataTree.assign_coords
   .. DataTree.merge
   .. DataTree.rename
   .. DataTree.rename_vars
   .. DataTree.rename_dims
   .. DataTree.swap_dims
   .. DataTree.expand_dims
   .. DataTree.drop_vars
   .. DataTree.drop_dims
   .. DataTree.set_coords
   .. DataTree.reset_coords

DataTree Node Contents
----------------------

Manipulate the contents of a single ``DataTree`` node.

.. autosummary::
   :toctree: ../generated/

   DataTree.assign
   DataTree.drop_nodes

DataTree Operations
-------------------

Apply operations over multiple ``DataTree`` objects.

.. autosummary::
   :toctree: ../generated/

   map_over_datasets
   group_subtrees

Comparisons
-----------

Compare one ``DataTree`` object to another.

.. autosummary::
   :toctree: ../generated/

    DataTree.isomorphic
    DataTree.equals
    DataTree.identical

Indexing
--------

Index into all nodes in the subtree simultaneously.

.. autosummary::
   :toctree: ../generated/

   DataTree.isel
   DataTree.sel

..    DataTree.drop_sel
..    DataTree.drop_isel
..    DataTree.head
..    DataTree.tail
..    DataTree.thin
..    DataTree.squeeze
..    DataTree.interp
..    DataTree.interp_like
..    DataTree.reindex
..    DataTree.reindex_like
..    DataTree.set_index
..    DataTree.reset_index
..    DataTree.reorder_levels
..    DataTree.query

.. ..

..    Missing:
..    ``DataTree.loc``


.. Missing Value Handling
.. ----------------------

.. .. autosummary::
..    :toctree: ../generated/

..    DataTree.isnull
..    DataTree.notnull
..    DataTree.combine_first
..    DataTree.dropna
..    DataTree.fillna
..    DataTree.ffill
..    DataTree.bfill
..    DataTree.interpolate_na
..    DataTree.where
..    DataTree.isin

.. Computation
.. -----------

.. Apply a computation to the data in all nodes in the subtree simultaneously.

.. .. autosummary::
..    :toctree: ../generated/

..    DataTree.map
..    DataTree.reduce
..    DataTree.diff
..    DataTree.quantile
..    DataTree.differentiate
..    DataTree.integrate
..    DataTree.map_blocks
..    DataTree.polyfit
..    DataTree.curvefit

Aggregation
-----------

Aggregate data in all nodes in the subtree simultaneously.

.. autosummary::
   :toctree: ../generated/

   DataTree.all
   DataTree.any
   DataTree.max
   DataTree.min
   DataTree.mean
   DataTree.median
   DataTree.prod
   DataTree.sum
   DataTree.std
   DataTree.var
   DataTree.cumsum
   DataTree.cumprod

ndarray methods
---------------

Methods copied from :py:class:`numpy.ndarray` objects, here applying to the data in all nodes in the subtree.

.. autosummary::
   :toctree: ../generated/

   DataTree.argsort
   DataTree.conj
   DataTree.conjugate
   DataTree.round
..    DataTree.astype
..    DataTree.clip
..    DataTree.rank

.. Reshaping and reorganising
.. --------------------------

.. Reshape or reorganise the data in all nodes in the subtree.

.. .. autosummary::
..    :toctree: ../generated/

..    DataTree.transpose
..    DataTree.stack
..    DataTree.unstack
..    DataTree.shift
..    DataTree.roll
..    DataTree.pad
..    DataTree.sortby
..    DataTree.broadcast_like