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from __future__ import annotations
import re
from functools import partial
import numpy as np
import pandas as pd
import pytest
import xarray as xr
from xarray.core import formatting_html as fh
from xarray.core.coordinates import Coordinates
def drop_fallback_text_repr(html: str) -> str:
pattern = (
re.escape("<pre class='xr-text-repr-fallback'>") + "[^<]*" + re.escape("</pre>")
)
return re.sub(pattern, "", html)
XarrayTypes = xr.DataTree | xr.Dataset | xr.DataArray | xr.Variable
def xarray_html_only_repr(obj: XarrayTypes) -> str:
return drop_fallback_text_repr(obj._repr_html_())
def assert_consistent_text_and_html(
obj: XarrayTypes, section_headers: list[str]
) -> None:
actual_html = xarray_html_only_repr(obj)
actual_text = repr(obj)
for section_header in section_headers:
assert actual_html.count(section_header) == actual_text.count(section_header), (
section_header
)
assert_consistent_text_and_html_dataarray = partial(
assert_consistent_text_and_html,
section_headers=[
"Coordinates",
"Indexes",
"Attributes",
],
)
assert_consistent_text_and_html_dataset = partial(
assert_consistent_text_and_html,
section_headers=[
"Dimensions",
"Coordinates",
"Data variables",
"Indexes",
"Attributes",
],
)
assert_consistent_text_and_html_datatree = partial(
assert_consistent_text_and_html,
section_headers=[
"Dimensions",
"Coordinates",
"Inherited coordinates",
"Data variables",
"Indexes",
"Attributes",
],
)
@pytest.fixture
def dataarray() -> xr.DataArray:
return xr.DataArray(np.random.default_rng(0).random((4, 6)))
@pytest.fixture
def dask_dataarray(dataarray: xr.DataArray) -> xr.DataArray:
pytest.importorskip("dask")
return dataarray.chunk()
@pytest.fixture
def multiindex() -> xr.Dataset:
midx = pd.MultiIndex.from_product(
[["a", "b"], [1, 2]], names=("level_1", "level_2")
)
midx_coords = Coordinates.from_pandas_multiindex(midx, "x")
return xr.Dataset({}, midx_coords)
@pytest.fixture
def dataset() -> xr.Dataset:
times = pd.date_range("2000-01-01", "2001-12-31", name="time")
annual_cycle = np.sin(2 * np.pi * (times.dayofyear.values / 365.25 - 0.28))
base = 10 + 15 * annual_cycle.reshape(-1, 1)
tmin_values = base + 3 * np.random.randn(annual_cycle.size, 3)
tmax_values = base + 10 + 3 * np.random.randn(annual_cycle.size, 3)
return xr.Dataset(
{
"tmin": (("time", "location"), tmin_values),
"tmax": (("time", "location"), tmax_values),
},
{"location": ["<IA>", "IN", "IL"], "time": times},
attrs={"description": "Test data."},
)
def test_short_data_repr_html(dataarray: xr.DataArray) -> None:
data_repr = fh.short_data_repr_html(dataarray)
assert data_repr.startswith("<pre>array")
def test_short_data_repr_html_non_str_keys(dataset: xr.Dataset) -> None:
ds = dataset.assign({2: lambda x: x["tmin"]})
fh.dataset_repr(ds)
def test_short_data_repr_html_dask(dask_dataarray: xr.DataArray) -> None:
assert hasattr(dask_dataarray.data, "_repr_html_")
data_repr = fh.short_data_repr_html(dask_dataarray)
assert data_repr == dask_dataarray.data._repr_html_()
def test_format_dims_no_dims() -> None:
dims: dict = {}
dims_with_index: list = []
formatted = fh.format_dims(dims, dims_with_index)
assert formatted == ""
def test_format_dims_unsafe_dim_name() -> None:
dims = {"<x>": 3, "y": 2}
dims_with_index: list = []
formatted = fh.format_dims(dims, dims_with_index)
assert "<x>" in formatted
def test_format_dims_non_index() -> None:
dims, dims_with_index = {"x": 3, "y": 2}, ["time"]
formatted = fh.format_dims(dims, dims_with_index)
assert "class='xr-has-index'" not in formatted
def test_format_dims_index() -> None:
dims, dims_with_index = {"x": 3, "y": 2}, ["x"]
formatted = fh.format_dims(dims, dims_with_index)
assert "class='xr-has-index'" in formatted
def test_summarize_attrs_with_unsafe_attr_name_and_value() -> None:
attrs = {"<x>": 3, "y": "<pd.DataFrame>"}
formatted = fh.summarize_attrs(attrs)
assert "<dt><span><x> :</span></dt>" in formatted
assert "<dt><span>y :</span></dt>" in formatted
assert "<dd>3</dd>" in formatted
assert "<dd><pd.DataFrame></dd>" in formatted
def test_repr_of_dataarray() -> None:
dataarray = xr.DataArray(np.random.default_rng(0).random((4, 6)))
formatted = xarray_html_only_repr(dataarray)
assert "dim_0" in formatted
# has an expanded data section
assert formatted.count("class='xr-array-in' type='checkbox' checked>") == 1
# coords, indexes and attrs don't have an items so they'll be omitted
assert "Coordinates" not in formatted
assert "Indexes" not in formatted
assert "Attributes" not in formatted
assert_consistent_text_and_html_dataarray(dataarray)
with xr.set_options(display_expand_data=False):
formatted = xarray_html_only_repr(dataarray)
assert "dim_0" in formatted
# has a collapsed data section
assert formatted.count("class='xr-array-in' type='checkbox' checked>") == 0
# coords, indexes and attrs don't have an items so they'll be omitted
assert "Coordinates" not in formatted
assert "Indexes" not in formatted
assert "Attributes" not in formatted
def test_repr_coords_order_of_datarray() -> None:
da1 = xr.DataArray(
np.empty((2, 2)),
coords={"foo": [0, 1], "bar": [0, 1]},
dims=["foo", "bar"],
)
da2 = xr.DataArray(
np.empty((2, 2)),
coords={"bar": [0, 1], "foo": [0, 1]},
dims=["bar", "foo"],
)
ds = xr.Dataset({"da1": da1, "da2": da2})
bar_line = (
"<span class='xr-has-index'>bar</span></div><div class='xr-var-dims'>(bar)"
)
foo_line = (
"<span class='xr-has-index'>foo</span></div><div class='xr-var-dims'>(foo)"
)
formatted_da1 = fh.array_repr(ds.da1)
assert formatted_da1.index(foo_line) < formatted_da1.index(bar_line)
formatted_da2 = fh.array_repr(ds.da2)
assert formatted_da2.index(bar_line) < formatted_da2.index(foo_line)
def test_repr_of_multiindex(multiindex: xr.Dataset) -> None:
formatted = fh.dataset_repr(multiindex)
assert "(x)" in formatted
assert_consistent_text_and_html_dataset(multiindex)
def test_repr_of_dataset(dataset: xr.Dataset) -> None:
formatted = xarray_html_only_repr(dataset)
# coords, attrs, and data_vars are expanded
assert (
formatted.count("class='xr-section-summary-in' type='checkbox' checked>") == 3
)
# indexes is omitted
assert "Indexes" not in formatted
assert "<U4" in formatted or ">U4" in formatted
assert "<IA>" in formatted
assert_consistent_text_and_html_dataset(dataset)
with xr.set_options(
display_expand_coords=False,
display_expand_data_vars=False,
display_expand_attrs=False,
display_expand_indexes=True,
display_default_indexes=True,
):
formatted = xarray_html_only_repr(dataset)
# coords, attrs, and data_vars are collapsed, indexes is shown & expanded
assert (
formatted.count("class='xr-section-summary-in' type='checkbox' checked>")
== 1
)
assert "Indexes" in formatted
assert "<U4" in formatted or ">U4" in formatted
assert "<IA>" in formatted
def test_repr_text_fallback(dataset: xr.Dataset) -> None:
formatted = fh.dataset_repr(dataset)
# Just test that the "pre" block used for fallback to plain text is present.
assert "<pre class='xr-text-repr-fallback'>" in formatted
def test_repr_coords_order_of_dataset() -> None:
ds = xr.Dataset()
ds.coords["as"] = 10
ds["var"] = xr.DataArray(np.ones((10,)), dims="x", coords={"x": np.arange(10)})
formatted = fh.dataset_repr(ds)
x_line = "<span class='xr-has-index'>x</span></div><div class='xr-var-dims'>(x)"
as_line = "<span>as</span></div><div class='xr-var-dims'>()"
assert formatted.index(x_line) < formatted.index(as_line)
def test_variable_repr_html() -> None:
v = xr.Variable(["time", "x"], [[1, 2, 3], [4, 5, 6]], {"foo": "bar"})
assert hasattr(v, "_repr_html_")
with xr.set_options(display_style="html"):
html = v._repr_html_().strip()
# We don't do a complete string identity since
# html output is probably subject to change, is long and... reasons.
# Just test that something reasonable was produced.
assert html.startswith("<div") and html.endswith("</div>")
assert "xarray.Variable" in html
def test_repr_of_nonstr_dataset(dataset: xr.Dataset) -> None:
ds = dataset.copy()
ds.attrs[1] = "Test value"
ds[2] = ds["tmin"]
formatted = fh.dataset_repr(ds)
assert "<dt><span>1 :</span></dt><dd>Test value</dd>" in formatted
assert "<div class='xr-var-name'><span>2</span>" in formatted
def test_repr_of_nonstr_dataarray(dataarray: xr.DataArray) -> None:
da = dataarray.rename(dim_0=15)
da.attrs[1] = "value"
formatted = fh.array_repr(da)
assert "<dt><span>1 :</span></dt><dd>value</dd>" in formatted
assert "<li><span>15</span>: 4</li>" in formatted
def test_nonstr_variable_repr_html() -> None:
v = xr.Variable(["time", 10], [[1, 2, 3], [4, 5, 6]], {22: "bar"})
assert hasattr(v, "_repr_html_")
with xr.set_options(display_style="html"):
html = v._repr_html_().strip()
assert "<dt><span>22 :</span></dt><dd>bar</dd>" in html
assert "<li><span>10</span>: 3</li></ul>" in html
class TestDataTreeTruncatesNodes:
def test_many_nodes(self) -> None:
# construct a datatree with 500 nodes
number_of_files = 20
number_of_groups = 25
tree_dict = {}
for f in range(number_of_files):
for g in range(number_of_groups):
tree_dict[f"file_{f}/group_{g}"] = xr.Dataset({"g": f * g})
tree = xr.DataTree.from_dict(tree_dict)
with xr.set_options(display_style="html"):
result = tree._repr_html_()
assert "6/20" in result
for i in range(number_of_files):
if i < 3 or i >= (number_of_files - 3):
assert f"file_{i}</div>" in result
else:
assert f"file_{i}</div>" not in result
assert "6/25" in result
for i in range(number_of_groups):
if i < 3 or i >= (number_of_groups - 3):
assert f"group_{i}</div>" in result
else:
assert f"group_{i}</div>" not in result
with xr.set_options(display_style="html", display_max_children=3):
result = tree._repr_html_()
assert "3/20" in result
for i in range(number_of_files):
if i < 2 or i >= (number_of_files - 1):
assert f"file_{i}</div>" in result
else:
assert f"file_{i}</div>" not in result
assert "3/25" in result
for i in range(number_of_groups):
if i < 2 or i >= (number_of_groups - 1):
assert f"group_{i}</div>" in result
else:
assert f"group_{i}</div>" not in result
class TestDataTreeInheritance:
def test_inherited_section_present(self) -> None:
dt = xr.DataTree.from_dict(data={"a/b/c": None}, coords={"x": [1]})
root_html = dt._repr_html_()
assert "Inherited coordinates" not in root_html
child_html = xarray_html_only_repr(dt["a"])
assert child_html.count("Inherited coordinates") == 1
def test_repr_consistency(self) -> None:
dt = xr.DataTree.from_dict({"/a/b/c": None})
assert_consistent_text_and_html_datatree(dt)
assert_consistent_text_and_html_datatree(dt["a"])
assert_consistent_text_and_html_datatree(dt["a/b"])
assert_consistent_text_and_html_datatree(dt["a/b/c"])
def test_no_repeated_style_or_fallback_text(self) -> None:
dt = xr.DataTree.from_dict({"/a/b/c": None})
html = dt._repr_html_()
assert html.count("<style>") == 1
assert html.count("<pre class='xr-text-repr-fallback'>") == 1
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